Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28275 | 3' | -41.3 | NC_005902.1 | + | 83901 | 0.7 | 1 |
Target: 5'- aGCAUcauugauaauGUUUUGuaucAUCGAUGAUGCUUUAa -3' miRNA: 3'- -CGUG----------UAAAAC----UAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 99692 | 0.69 | 1 |
Target: 5'- cCACAUU---GUUGAUGAcGCCUUAGg -3' miRNA: 3'- cGUGUAAaacUAGUUACUaCGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 27631 | 0.7 | 1 |
Target: 5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3' miRNA: 3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 118536 | 0.69 | 1 |
Target: 5'- uCAUAUc---AUCGAUGAUGCCUUAa -3' miRNA: 3'- cGUGUAaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 29535 | 0.68 | 1 |
Target: 5'- cCACGg--UGucAUCAAUGAUGCUUUGu -3' miRNA: 3'- cGUGUaaaAC--UAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 100351 | 0.69 | 1 |
Target: 5'- cCAUAcugucAUCAAUGAUGCCUUAa -3' miRNA: 3'- cGUGUaaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 20070 | 0.66 | 1 |
Target: 5'- -gACAU----GUCAAUGAUGCUUUAu -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 125712 | 0.68 | 1 |
Target: 5'- uCACAUcauuAUCAAUGAUGCUUUGu -3' miRNA: 3'- cGUGUAaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 84077 | 0.68 | 1 |
Target: 5'- uGCACuauc--AUCAAUGGUGUCUUGa -3' miRNA: 3'- -CGUGuaaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 156494 | 0.67 | 1 |
Target: 5'- uCACAUc---AUUGAUGAUGCCUUAa -3' miRNA: 3'- cGUGUAaaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 27948 | 0.7 | 1 |
Target: 5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3' miRNA: 3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 55110 | 0.66 | 1 |
Target: 5'- cCGCAUUgucAUUGAUGAUGCUUUGu -3' miRNA: 3'- cGUGUAAaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 131036 | 0.69 | 1 |
Target: 5'- aGUACAaaaUGuuAUCGAUGAcGCCUUAGa -3' miRNA: 3'- -CGUGUaaaAC--UAGUUACUaCGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 26539 | 0.69 | 1 |
Target: 5'- -aGCGUc---AUUGAUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAaaacUAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 67410 | 0.69 | 1 |
Target: 5'- -gGCAUU---GUUAuUGAUGCCUUAGg -3' miRNA: 3'- cgUGUAAaacUAGUuACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 75974 | 0.67 | 1 |
Target: 5'- -uGCGUUgUGucAUUGAUGGUGCUUUAGg -3' miRNA: 3'- cgUGUAAaAC--UAGUUACUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 63337 | 0.67 | 1 |
Target: 5'- uUACcUUUUGGauaUCAaugAUGAUGCCUUAa -3' miRNA: 3'- cGUGuAAAACU---AGU---UACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 91287 | 0.67 | 1 |
Target: 5'- aCACAUc---AUCAAUaAUGCCUUAGg -3' miRNA: 3'- cGUGUAaaacUAGUUAcUACGGAAUC- -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 88943 | 0.67 | 1 |
Target: 5'- --gUAUU---AUCAAUGAUGCCUUAa -3' miRNA: 3'- cguGUAAaacUAGUUACUACGGAAUc -5' |
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28275 | 3' | -41.3 | NC_005902.1 | + | 104157 | 0.66 | 1 |
Target: 5'- uCACAauaucAUCAAUGAUGCUUUAa -3' miRNA: 3'- cGUGUaaaacUAGUUACUACGGAAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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