miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 3' -41.3 NC_005902.1 + 83901 0.7 1
Target:  5'- aGCAUcauugauaauGUUUUGuaucAUCGAUGAUGCUUUAa -3'
miRNA:   3'- -CGUG----------UAAAAC----UAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 99692 0.69 1
Target:  5'- cCACAUU---GUUGAUGAcGCCUUAGg -3'
miRNA:   3'- cGUGUAAaacUAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 27631 0.7 1
Target:  5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3'
miRNA:   3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 118536 0.69 1
Target:  5'- uCAUAUc---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 29535 0.68 1
Target:  5'- cCACGg--UGucAUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUaaaAC--UAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 100351 0.69 1
Target:  5'- cCAUAcugucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 20070 0.66 1
Target:  5'- -gACAU----GUCAAUGAUGCUUUAu -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 125712 0.68 1
Target:  5'- uCACAUcauuAUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 84077 0.68 1
Target:  5'- uGCACuauc--AUCAAUGGUGUCUUGa -3'
miRNA:   3'- -CGUGuaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 156494 0.67 1
Target:  5'- uCACAUc---AUUGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 27948 0.7 1
Target:  5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3'
miRNA:   3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 55110 0.66 1
Target:  5'- cCGCAUUgucAUUGAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 131036 0.69 1
Target:  5'- aGUACAaaaUGuuAUCGAUGAcGCCUUAGa -3'
miRNA:   3'- -CGUGUaaaAC--UAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 26539 0.69 1
Target:  5'- -aGCGUc---AUUGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 67410 0.69 1
Target:  5'- -gGCAUU---GUUAuUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUuACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 75974 0.67 1
Target:  5'- -uGCGUUgUGucAUUGAUGGUGCUUUAGg -3'
miRNA:   3'- cgUGUAAaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 63337 0.67 1
Target:  5'- uUACcUUUUGGauaUCAaugAUGAUGCCUUAa -3'
miRNA:   3'- cGUGuAAAACU---AGU---UACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 91287 0.67 1
Target:  5'- aCACAUc---AUCAAUaAUGCCUUAGg -3'
miRNA:   3'- cGUGUAaaacUAGUUAcUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 88943 0.67 1
Target:  5'- --gUAUU---AUCAAUGAUGCCUUAa -3'
miRNA:   3'- cguGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 104157 0.66 1
Target:  5'- uCACAauaucAUCAAUGAUGCUUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.