miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 3' -41.3 NC_005902.1 + 172689 0.75 0.999692
Target:  5'- -gAUGUgaagUGuuGUCAAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaa--AC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 168528 0.79 0.990382
Target:  5'- cCACGUUg----CGAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGUAAaacuaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 167334 0.74 0.999816
Target:  5'- -aACAUUauuAUCAAUGAUGCUUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 156494 0.67 1
Target:  5'- uCACAUc---AUUGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 149284 0.76 0.998522
Target:  5'- -gACAUc---AUCGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 149255 0.85 0.898401
Target:  5'- -aACAUUUUGcAUCAuugAUGAUGCCUUAGa -3'
miRNA:   3'- cgUGUAAAAC-UAGU---UACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 146892 0.66 1
Target:  5'- cUACAUUgucAUCAAUGAUGCUUc-- -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAauc -5'
28275 3' -41.3 NC_005902.1 + 144116 0.78 0.996253
Target:  5'- -aACAcUUUGuAUCAuUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUaAAAC-UAGUuACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 142112 0.81 0.978941
Target:  5'- cCACAUUgucAUCGAUGAUGCUUUAGg -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 137959 0.76 0.998522
Target:  5'- -uGCAUU---AUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 131036 0.69 1
Target:  5'- aGUACAaaaUGuuAUCGAUGAcGCCUUAGa -3'
miRNA:   3'- -CGUGUaaaAC--UAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 125712 0.68 1
Target:  5'- uCACAUcauuAUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 122858 0.82 0.955473
Target:  5'- -gACGUUUUGcauuGUUGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAAAC----UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 118536 0.69 1
Target:  5'- uCAUAUc---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 114960 0.77 0.997373
Target:  5'- -aACGUaUU-AUCAAUGAUGCCUUGGg -3'
miRNA:   3'- cgUGUAaAAcUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 113546 0.67 1
Target:  5'- cCACAUU---AUUAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 110982 0.73 0.99994
Target:  5'- uUACAccaUGGUCAAUGAUGCUUUGu -3'
miRNA:   3'- cGUGUaaaACUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 106104 0.74 0.999816
Target:  5'- -----cUUUGcAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cguguaAAAC-UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 104502 0.73 0.999977
Target:  5'- uCACAccgucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 104157 0.66 1
Target:  5'- uCACAauaucAUCAAUGAUGCUUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.