miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28275 3' -41.3 NC_005902.1 + 90711 0.77 0.997373
Target:  5'- cCACAUcgUcAUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAaaAcUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 55216 0.71 0.999997
Target:  5'- aUACuuugUGuuAUUAAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGuaaaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 68099 0.71 0.999996
Target:  5'- cUAUAUU---AUCGAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 104502 0.73 0.999977
Target:  5'- uCACAccgucAUCAAUGAUGCCUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 50201 0.75 0.999761
Target:  5'- -aGCAUU---AUUGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 50632 0.75 0.999692
Target:  5'- -aAUAUguc-AUCGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 26428 0.77 0.997819
Target:  5'- cUACAccaucGUCAAUGAUGCCUUAGg -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 11289 0.77 0.997649
Target:  5'- uGCAaaguaucAUCAAUGAUGCCUUAGg -3'
miRNA:   3'- -CGUguaaaacUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 114960 0.77 0.997373
Target:  5'- -aACGUaUU-AUCAAUGAUGCCUUGGg -3'
miRNA:   3'- cgUGUAaAAcUAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 27948 0.7 1
Target:  5'- uGC-CAUc--GG-CGAUGAUGCCUUAGg -3'
miRNA:   3'- -CGuGUAaaaCUaGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 83901 0.7 1
Target:  5'- aGCAUcauugauaauGUUUUGuaucAUCGAUGAUGCUUUAa -3'
miRNA:   3'- -CGUG----------UAAAAC----UAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 131036 0.69 1
Target:  5'- aGUACAaaaUGuuAUCGAUGAcGCCUUAGa -3'
miRNA:   3'- -CGUGUaaaAC--UAGUUACUaCGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 146892 0.66 1
Target:  5'- cUACAUUgucAUCAAUGAUGCUUc-- -3'
miRNA:   3'- cGUGUAAaacUAGUUACUACGGAauc -5'
28275 3' -41.3 NC_005902.1 + 104157 0.66 1
Target:  5'- uCACAauaucAUCAAUGAUGCUUUAa -3'
miRNA:   3'- cGUGUaaaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 88943 0.67 1
Target:  5'- --gUAUU---AUCAAUGAUGCCUUAa -3'
miRNA:   3'- cguGUAAaacUAGUUACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 91287 0.67 1
Target:  5'- aCACAUc---AUCAAUaAUGCCUUAGg -3'
miRNA:   3'- cGUGUAaaacUAGUUAcUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 63337 0.67 1
Target:  5'- uUACcUUUUGGauaUCAaugAUGAUGCCUUAa -3'
miRNA:   3'- cGUGuAAAACU---AGU---UACUACGGAAUc -5'
28275 3' -41.3 NC_005902.1 + 75974 0.67 1
Target:  5'- -uGCGUUgUGucAUUGAUGGUGCUUUAGg -3'
miRNA:   3'- cgUGUAAaAC--UAGUUACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 67410 0.69 1
Target:  5'- -gGCAUU---GUUAuUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAAaacUAGUuACUACGGAAUC- -5'
28275 3' -41.3 NC_005902.1 + 26539 0.69 1
Target:  5'- -aGCGUc---AUUGAUGAUGCCUUAGg -3'
miRNA:   3'- cgUGUAaaacUAGUUACUACGGAAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.