miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28276 3' -46.5 NC_005902.1 + 114355 0.66 0.99997
Target:  5'- --aUUCUAACACCUAAGCUAUa---- -3'
miRNA:   3'- uggGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 168126 0.66 0.99997
Target:  5'- -aCCUCUAGCACCUuuAUCAc----- -3'
miRNA:   3'- ugGGAGAUUGUGGAuuUGGUacauau -5'
28276 3' -46.5 NC_005902.1 + 71207 0.66 0.99997
Target:  5'- aACCUUUUAAUGCUUAAGCUAuauacacucguuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGU------------ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 47184 0.66 0.999945
Target:  5'- -aCCUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- ugGGAGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 28789 0.66 0.999945
Target:  5'- uAUCCUUUAACAUCUGuGCUcuuuUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUuUGGu---ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 7841 0.66 0.999945
Target:  5'- aACCUUUUAAUACUUAAACUAUauacaaaugaGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGGUA----------CAUAU- -5'
28276 3' -46.5 NC_005902.1 + 92264 0.66 0.999926
Target:  5'- uACUUUUUaAACAUCUAAGCUAUGUAc- -3'
miRNA:   3'- -UGGGAGA-UUGUGGAUUUGGUACAUau -5'
28276 3' -46.5 NC_005902.1 + 169363 0.66 0.999926
Target:  5'- -aCUUUUAACAUCUAAGCUAUGa--- -3'
miRNA:   3'- ugGGAGAUUGUGGAUUUGGUACauau -5'
28276 3' -46.5 NC_005902.1 + 131124 0.66 0.999926
Target:  5'- uACCCUUUAAauCCUAAGCUauaaacaauuGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUguGGAUUUGG----------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 131366 0.66 0.999926
Target:  5'- aACCCUU-AAUACCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGaUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 6442 0.66 0.999926
Target:  5'- aACCCUUUAACAaCUAAGCUAUa---- -3'
miRNA:   3'- -UGGGAGAUUGUgGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 169738 0.67 0.999903
Target:  5'- aACCCUgUAACACCUGAGauauauagcUCAgGUGUu -3'
miRNA:   3'- -UGGGAgAUUGUGGAUUU---------GGUaCAUAu -5'
28276 3' -46.5 NC_005902.1 + 134580 0.67 0.999903
Target:  5'- aACCCuUUUAACACUUAAGCUAUa---- -3'
miRNA:   3'- -UGGG-AGAUUGUGGAUUUGGUAcauau -5'
28276 3' -46.5 NC_005902.1 + 56735 0.67 0.999903
Target:  5'- uACCCUCUGAUACUacucuacuACCAaGUAUc -3'
miRNA:   3'- -UGGGAGAUUGUGGauu-----UGGUaCAUAu -5'
28276 3' -46.5 NC_005902.1 + 91554 0.67 0.999872
Target:  5'- aACaaUCuUAAUACCUAAGCUAUGUAc- -3'
miRNA:   3'- -UGggAG-AUUGUGGAUUUGGUACAUau -5'
28276 3' -46.5 NC_005902.1 + 141993 0.67 0.999834
Target:  5'- aACUCUUUAACAUUUAAGCUauauacaaaugcGUGUAUAu -3'
miRNA:   3'- -UGGGAGAUUGUGGAUUUGG------------UACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 84885 0.67 0.999834
Target:  5'- aGCUCUUUAACAUCUAAaauuauAUgAUGUAUAa -3'
miRNA:   3'- -UGGGAGAUUGUGGAUU------UGgUACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 75082 0.67 0.999834
Target:  5'- aACCCUUUAACuCCUAAugCGuUGUu-- -3'
miRNA:   3'- -UGGGAGAUUGuGGAUUugGU-ACAuau -5'
28276 3' -46.5 NC_005902.1 + 137848 0.67 0.999834
Target:  5'- aACCCUUUAACuCCUAAaguAUCAuugaUGUAUGa -3'
miRNA:   3'- -UGGGAGAUUGuGGAUU---UGGU----ACAUAU- -5'
28276 3' -46.5 NC_005902.1 + 63611 0.67 0.99982
Target:  5'- uACCuCUUUAACAUCUAAGCUAUauacaaacaagugaGUGUAu -3'
miRNA:   3'- -UGG-GAGAUUGUGGAUUUGGUA--------------CAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.