miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 3' -36.1 NC_005902.1 + 110170 0.84 0.999513
Target:  5'- cCUUUAAUUCCUAAGGcAUUGUCAGa- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 25070 0.84 0.999706
Target:  5'- cCUUUAACUCCUAAAGcGUUGUUGAc- -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 35000 0.84 0.999706
Target:  5'- -gUUAACUCCUAAGGUAUcAUUAAUa -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 26324 0.83 0.999775
Target:  5'- -aUUAACUCCUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 92332 0.83 0.999775
Target:  5'- uUUUAACUUUUAAGGUAUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGAGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 49984 0.83 0.999775
Target:  5'- cCUUUAACUCCUAAGGcAUcAUCAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 125951 0.83 0.999829
Target:  5'- uCUUUAACUUCUAAGGcAUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 10706 0.83 0.999829
Target:  5'- uUUUAAUUCCUAAGGcAUUAUCGAUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 118962 0.83 0.999903
Target:  5'- uUUUAACUCCUAAAGcAUUAUUGAUa -3'
miRNA:   3'- gAAAUUGAGGAUUUCaUAAUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 75079 0.82 0.999929
Target:  5'- cCUUUAACUCCUAAuGcGUUGUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUuCaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 8346 0.82 0.999929
Target:  5'- -cUUAACUCCUAAAacAUUGUCGAUGa -3'
miRNA:   3'- gaAAUUGAGGAUUUcaUAAUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 156711 0.82 0.999948
Target:  5'- cCUUUAACUCUUAAGGcAUcAUCAAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 95877 0.81 0.999973
Target:  5'- --cUAACUCCUAAGGcAUUAUCAAc- -3'
miRNA:   3'- gaaAUUGAGGAUUUCaUAAUAGUUac -5'
28277 3' -36.1 NC_005902.1 + 37678 0.81 0.999973
Target:  5'- uCUUUAACUCUUAAAGUAUcaUAaCAAUGu -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUA--AUaGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 136866 0.81 0.999973
Target:  5'- uUUUAAUcCCUAAAGUGUcAUCAAUGa -3'
miRNA:   3'- gAAAUUGaGGAUUUCAUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 15931 0.81 0.999973
Target:  5'- cCUUUAAUUCCUGGGGUAUcAUUAAUa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCAUAaUAGUUAc -5'
28277 3' -36.1 NC_005902.1 + 81408 0.81 0.999981
Target:  5'- -aUUAACUCUUAAGGUGUUGUUAu-- -3'
miRNA:   3'- gaAAUUGAGGAUUUCAUAAUAGUuac -5'
28277 3' -36.1 NC_005902.1 + 90491 0.81 0.999981
Target:  5'- cCUUUAACUCUUAAGGcAUcAUCGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 16806 0.81 0.999986
Target:  5'- cCUUUAACUCCUAAGGcAUcAUUGAUGa -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5'
28277 3' -36.1 NC_005902.1 + 106321 0.81 0.999986
Target:  5'- uCUUUAACUCCUAAGGcAUcAUUAAUGc -3'
miRNA:   3'- -GAAAUUGAGGAUUUCaUAaUAGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.