miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 33474 0.72 0.86556
Target:  5'- uGUCAUCGAcGAUaCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUaCUGcGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 122823 0.68 0.959076
Target:  5'- cAUCAUCGAUGAUGCUUUguguuguuaAGGAuGCc-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAA---------UCCU-CGauu -5'
28277 5' -51.2 NC_005902.1 + 161990 0.69 0.955149
Target:  5'- uAUCAUCaAUGACaCCUUAGGuGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGcGGAAUCCuCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 43805 0.69 0.950974
Target:  5'- uGUUAUCGAUGACaUUUUAGGAGUUu- -3'
miRNA:   3'- -UAGUAGCUACUGcGGAAUCCUCGAuu -5'
28277 5' -51.2 NC_005902.1 + 168526 0.69 0.950974
Target:  5'- -aCGUugCGAUGAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- uaGUA--GCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 16032 0.69 0.940409
Target:  5'- uAUCAaUGAUGGggcaucauuaacaaUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUaGCUACU--------------GCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 162164 0.69 0.936923
Target:  5'- uGUUAUUaacGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcuaCUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 8559 0.7 0.931722
Target:  5'- uGUCAUCGAcaAUGUUUUAGGAGUUAAg -3'
miRNA:   3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 68037 0.7 0.908307
Target:  5'- uGUCAUUGAcaAUGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 149246 0.68 0.969423
Target:  5'- cAUCAUUGAUGAUGCCUUAGa------ -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCcucgauu -5'
28277 5' -51.2 NC_005902.1 + 48254 0.68 0.972414
Target:  5'- ----cUGAcGAUGCCUUAGGAGUUAu -3'
miRNA:   3'- uaguaGCUaCUGCGGAAUCCUCGAUu -5'
28277 5' -51.2 NC_005902.1 + 25285 0.67 0.975188
Target:  5'- uAUCGUCaacaACGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcuacUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 134490 0.66 0.992878
Target:  5'- -cCAUUGuuaauaAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGCuac---UGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 85339 0.66 0.991793
Target:  5'- cAUUAUUGAUGACGCau--GGAGUUu- -3'
miRNA:   3'- -UAGUAGCUACUGCGgaauCCUCGAuu -5'
28277 5' -51.2 NC_005902.1 + 104151 0.66 0.991793
Target:  5'- uAUCAUCaAUGAUGCUUUaagaauuaaAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAA---------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 149484 0.66 0.990581
Target:  5'- cAUCAUCGAUGAUGUCUUAaGuGUa-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUcCuCGauu -5'
28277 5' -51.2 NC_005902.1 + 48400 0.67 0.983699
Target:  5'- cGUCAUCGAUGAUacaaaGCaucauugauaauacUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUG-----CG--------------GAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 37552 0.67 0.981008
Target:  5'- cAUC-UCGAUGACGCCUUguguuauugaugacaAcauGGAGUUAAa -3'
miRNA:   3'- -UAGuAGCUACUGCGGAA---------------U---CCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 93506 0.67 0.980117
Target:  5'- cAUCAUUGAUGAUGCUUUAaaAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUccUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 158132 0.67 0.977753
Target:  5'- cAUCAUCGAUGACaCau--GGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGcGgaauCCUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.