Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 134099 | 0.71 | 1 |
Target: 5'- uUCUUUAAUUUCAUAUUGUcauUGUUGAUa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCA---ACAAUUAc -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 136638 | 0.7 | 1 |
Target: 5'- uCCUUUAACUUCAUGCauca-UUGAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGgcaacAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 139816 | 0.69 | 1 |
Target: 5'- cCUUUUAACUCCA---UGUUGUcAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaugGCAACAaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 167483 | 0.69 | 1 |
Target: 5'- cUCUUUAAUUCUAUACUGUUaucAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCAAcaaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 11128 | 0.69 | 1 |
Target: 5'- cCCUUUAAaUCCA---UGUUGUUGAUGc -3' miRNA: 3'- -GGAAAUUgAGGUaugGCAACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 162466 | 0.69 | 1 |
Target: 5'- uUUUUAAUUCCuaaGgUGUUGUUGAUGg -3' miRNA: 3'- gGAAAUUGAGGua-UgGCAACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 140898 | 0.72 | 0.999998 |
Target: 5'- uCCUUaAACUCCAUGuuGUUGa----- -3' miRNA: 3'- -GGAAaUUGAGGUAUggCAACaauuac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 146653 | 0.73 | 0.999997 |
Target: 5'- aCCUUUAACUCUAcAUUGUcGUUAAUa -3' miRNA: 3'- -GGAAAUUGAGGUaUGGCAaCAAUUAc -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 136730 | 0.73 | 0.999995 |
Target: 5'- uUCUUUAACUCCAUGuuGUcauugacaaUGcUUAGUGu -3' miRNA: 3'- -GGAAAUUGAGGUAUggCA---------AC-AAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 40736 | 0.8 | 0.993653 |
Target: 5'- cCUUUUAACUCCAUGCUaUUGUcAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGcAACAaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 180958 | 0.8 | 0.994574 |
Target: 5'- cCCUUUAAC-CCAUGCUGUUGUc---- -3' miRNA: 3'- -GGAAAUUGaGGUAUGGCAACAauuac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 76425 | 0.79 | 0.996092 |
Target: 5'- cUCUUUAAUUCCAcAgUGUUGUUGAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaUgGCAACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 25069 | 0.79 | 0.996709 |
Target: 5'- cCCUUUAACUCCuaaAgCGUUGUUGAc- -3' miRNA: 3'- -GGAAAUUGAGGua-UgGCAACAAUUac -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 184445 | 0.79 | 0.997243 |
Target: 5'- cCCUUUAACUCUuaaGgUGUUGUUAAUGa -3' miRNA: 3'- -GGAAAUUGAGGua-UgGCAACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 82186 | 0.79 | 0.997703 |
Target: 5'- uCCUUUAACUCCAUAUUGUUaucAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCAAcaaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 167376 | 0.79 | 0.997703 |
Target: 5'- cCCUUUAACUCUAcACUGUUGccAGUGa -3' miRNA: 3'- -GGAAAUUGAGGUaUGGCAACaaUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 15803 | 0.77 | 0.999156 |
Target: 5'- uCCUUUAACUCCuaagGCa-UUGUUAAUGa -3' miRNA: 3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 25183 | 0.77 | 0.999572 |
Target: 5'- uCCUUUAACU-CAUAUCaUUGUUGAUGa -3' miRNA: 3'- -GGAAAUUGAgGUAUGGcAACAAUUAC- -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 81928 | 0.76 | 0.999796 |
Target: 5'- cCCUUUAACUCCGcaacaucauuaaUACUGUaaagUGUUAAUa -3' miRNA: 3'- -GGAAAUUGAGGU------------AUGGCA----ACAAUUAc -5' |
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28278 | 3' | -40.7 | NC_005902.1 | + | 67425 | 0.73 | 0.999993 |
Target: 5'- uCCUUUAACUCUAUACUGUc------- -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCAacaauuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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