Results 41 - 60 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 91299 | 0.66 | 1 |
Target: 5'- cCCUUUAACUCCAcacaucaucaauaaUGCCuuaGgaGUUAAg- -3' miRNA: 3'- -GGAAAUUGAGGU--------------AUGG---CaaCAAUUac -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 93488 | 0.66 | 1 |
Target: 5'- aCCUUUAACUCUAcAUUaUUGUcAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaUGGcAACAaUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 93541 | 0.81 | 0.988648 |
Target: 5'- cCCcUUAACUUCAcAUCGUUGUUAAUGa -3' miRNA: 3'- -GGaAAUUGAGGUaUGGCAACAAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 95702 | 0.74 | 0.999963 |
Target: 5'- ----aAACUCaAUGCUGUUGUUGAUGa -3' miRNA: 3'- ggaaaUUGAGgUAUGGCAACAAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 96124 | 0.7 | 1 |
Target: 5'- cCCUUUAAUUCUAUAUCGUcaucAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCAacaaUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 100455 | 0.68 | 1 |
Target: 5'- uCCUUUAACUCCAcauuguaauaaUGCUuuGggGUUAAa- -3' miRNA: 3'- -GGAAAUUGAGGU-----------AUGG--CaaCAAUUac -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 105999 | 0.66 | 1 |
Target: 5'- cUCUUUAACUCCuaa--GUUGUUcucAAUGa -3' miRNA: 3'- -GGAAAUUGAGGuauggCAACAA---UUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 112530 | 0.74 | 0.999986 |
Target: 5'- cCCUUUAACUCUAcACUGUUaUUGAUa -3' miRNA: 3'- -GGAAAUUGAGGUaUGGCAAcAAUUAc -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 113782 | 0.78 | 0.998717 |
Target: 5'- uCCUUUGAUUCCAUGuuGUUaaUAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUggCAAcaAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 113964 | 0.69 | 1 |
Target: 5'- cCCUUUAACUuuGUAUUGUUaaUGAUGc -3' miRNA: 3'- -GGAAAUUGAggUAUGGCAAcaAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 114991 | 0.66 | 1 |
Target: 5'- cCCUUUAACUCUAcAUCGUcaccGAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaUGGCAacaaUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 125952 | 0.66 | 1 |
Target: 5'- cUCUUUAACUUCuaagGCa-UUGUUGAUGa -3' miRNA: 3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 134099 | 0.71 | 1 |
Target: 5'- uUCUUUAAUUUCAUAUUGUcauUGUUGAUa -3' miRNA: 3'- -GGAAAUUGAGGUAUGGCA---ACAAUUAc -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 134505 | 0.68 | 1 |
Target: 5'- cCCcUUAACUUCAcACCaUUGUUAAUa -3' miRNA: 3'- -GGaAAUUGAGGUaUGGcAACAAUUAc -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 136119 | 0.68 | 1 |
Target: 5'- uCCUUUAACUCCAcACUaucaUUAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaUGGcaacAAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 136424 | 0.66 | 1 |
Target: 5'- --aUUAACUCUAUGCUGUuauaacacuuuauguUGUUAAc- -3' miRNA: 3'- ggaAAUUGAGGUAUGGCA---------------ACAAUUac -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 136638 | 0.7 | 1 |
Target: 5'- uCCUUUAACUUCAUGCauca-UUGAUGa -3' miRNA: 3'- -GGAAAUUGAGGUAUGgcaacAAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 136730 | 0.73 | 0.999995 |
Target: 5'- uUCUUUAACUCCAUGuuGUcauugacaaUGcUUAGUGu -3' miRNA: 3'- -GGAAAUUGAGGUAUggCA---------AC-AAUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 139816 | 0.69 | 1 |
Target: 5'- cCUUUUAACUCCA---UGUUGUcAAUGa -3' miRNA: 3'- -GGAAAUUGAGGUaugGCAACAaUUAC- -5' |
|||||||
28278 | 3' | -40.7 | NC_005902.1 | + | 140898 | 0.72 | 0.999998 |
Target: 5'- uCCUUaAACUCCAUGuuGUUGa----- -3' miRNA: 3'- -GGAAaUUGAGGUAUggCAACaauuac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home