miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 93488 0.66 1
Target:  5'- aCCUUUAACUCUAcAUUaUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 17055 0.69 1
Target:  5'- cCUUUUAACUCUAUGuuGUcaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 136424 0.66 1
Target:  5'- --aUUAACUCUAUGCUGUuauaacacuuuauguUGUUAAc- -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCA---------------ACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 93541 0.81 0.988648
Target:  5'- cCCcUUAACUUCAcAUCGUUGUUAAUGa -3'
miRNA:   3'- -GGaAAUUGAGGUaUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 33490 0.67 1
Target:  5'- uCCUUUAACUCUAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 100455 0.68 1
Target:  5'- uCCUUUAACUCCAcauuguaauaaUGCUuuGggGUUAAa- -3'
miRNA:   3'- -GGAAAUUGAGGU-----------AUGG--CaaCAAUUac -5'
28278 3' -40.7 NC_005902.1 + 39401 0.69 1
Target:  5'- cCUUUUAACUCCAUAUUGaugaugcuUUGUUAu-- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGC--------AACAAUuac -5'
28278 3' -40.7 NC_005902.1 + 29276 0.7 1
Target:  5'- --aUUAACUCCAcAUUGUUGcUGAUGa -3'
miRNA:   3'- ggaAAUUGAGGUaUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 96124 0.7 1
Target:  5'- cCCUUUAAUUCUAUAUCGUcaucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 8594 0.8 0.993653
Target:  5'- cUCUUUAACUCUAcACCaUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 35150 0.8 0.993653
Target:  5'- cCCUUUAACcCCAUAUUGUUGaUGAUGu -3'
miRNA:   3'- -GGAAAUUGaGGUAUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 6362 0.78 0.998097
Target:  5'- --gUUAACUCUAUGCUGUUGaUAAUGu -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 113782 0.78 0.998717
Target:  5'- uCCUUUGAUUCCAUGuuGUUaaUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAAcaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 181206 0.78 0.998717
Target:  5'- cCCUUUAACUCCuaaAgCGUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 76595 0.76 0.999663
Target:  5'- uCCUUUAAUUCUAUGCUGUUaUUGGUa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 55243 0.76 0.999638
Target:  5'- cCCUUUAAUUCCAUGCUGUcaucaacgauacuuUGUguuauUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCA--------------ACA-----AUUAC- -5'
28278 3' -40.7 NC_005902.1 + 51609 0.75 0.999881
Target:  5'- cCCUUUAAUUCCuaaugUGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGuaug-GCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 95702 0.74 0.999963
Target:  5'- ----aAACUCaAUGCUGUUGUUGAUGa -3'
miRNA:   3'- ggaaaUUGAGgUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 58573 0.74 0.999986
Target:  5'- cCCUUUAACUCCAUG-CGUcaucaauacuuugUGUUAuUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUgGCA-------------ACAAUuAC- -5'
28278 3' -40.7 NC_005902.1 + 166125 0.7 1
Target:  5'- cCCUUUAACUUCAcaucauugaugaUACUuugUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGca-ACAAUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.