miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 136638 0.7 1
Target:  5'- uCCUUUAACUUCAUGCauca-UUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGgcaacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 134099 0.71 1
Target:  5'- uUCUUUAAUUUCAUAUUGUcauUGUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCA---ACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 37319 0.72 0.999999
Target:  5'- cCCUUUAACUCCAUGuuGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 81928 0.76 0.999796
Target:  5'- cCCUUUAACUCCGcaacaucauuaaUACUGUaaagUGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGCA----ACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 50529 0.67 1
Target:  5'- cCCUUUAACUCUuccaugcacagcaAUACUGauguaUUGUUGGUa -3'
miRNA:   3'- -GGAAAUUGAGG-------------UAUGGC-----AACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 33156 0.68 1
Target:  5'- aCCUUUAACUCUAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 73624 0.72 0.999999
Target:  5'- cCCUUUAACUCUuaa--GUUGUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGuauggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 25183 0.77 0.999572
Target:  5'- uCCUUUAACU-CAUAUCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAgGUAUGGcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 162466 0.69 1
Target:  5'- uUUUUAAUUCCuaaGgUGUUGUUGAUGg -3'
miRNA:   3'- gGAAAUUGAGGua-UgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 15803 0.77 0.999156
Target:  5'- uCCUUUAACUCCuaagGCa-UUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 174665 0.71 1
Target:  5'- cCCUUUAAUUCCAUAUUGUUa------ -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcaauuac -5'
28278 3' -40.7 NC_005902.1 + 139816 0.69 1
Target:  5'- cCUUUUAACUCCA---UGUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 144089 0.72 0.999999
Target:  5'- aCCaUUUAACUCUAUACCacUGUUGAc- -3'
miRNA:   3'- -GG-AAAUUGAGGUAUGGcaACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 23358 0.72 0.999999
Target:  5'- cCCUUUAAUUCUA---UGUUGUUAAUGc -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 140898 0.72 0.999998
Target:  5'- uCCUUaAACUCCAUGuuGUUGa----- -3'
miRNA:   3'- -GGAAaUUGAGGUAUggCAACaauuac -5'
28278 3' -40.7 NC_005902.1 + 67425 0.73 0.999993
Target:  5'- uCCUUUAACUCUAUACUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 34907 0.66 1
Target:  5'- uCUUUUAACUCCAUAUUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 39158 0.67 1
Target:  5'- cCCcUUAACUCCuaaAaaGUUGUUGAUa -3'
miRNA:   3'- -GGaAAUUGAGGua-UggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 66954 0.68 1
Target:  5'- aCCaUUUAGCUCUAcacAUCGUUGaUGAUGu -3'
miRNA:   3'- -GG-AAAUUGAGGUa--UGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 81856 0.68 1
Target:  5'- cUCUUUAACUCCuaaGgCGUUaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAAcAAUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.