miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 50529 0.67 1
Target:  5'- cCCUUUAACUCUuccaugcacagcaAUACUGauguaUUGUUGGUa -3'
miRNA:   3'- -GGAAAUUGAGG-------------UAUGGC-----AACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 51609 0.75 0.999881
Target:  5'- cCCUUUAAUUCCuaaugUGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGuaug-GCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 52842 1.14 0.070222
Target:  5'- uCCUUUAACUCCAUACCGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 53092 0.68 1
Target:  5'- uCCUUUAACUCUuaagGUAUUGUUGaUGAc- -3'
miRNA:   3'- -GGAAAUUGAGG----UAUGGCAACaAUUac -5'
28278 3' -40.7 NC_005902.1 + 55243 0.76 0.999638
Target:  5'- cCCUUUAAUUCCAUGCUGUcaucaacgauacuuUGUguuauUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCA--------------ACA-----AUUAC- -5'
28278 3' -40.7 NC_005902.1 + 58573 0.74 0.999986
Target:  5'- cCCUUUAACUCCAUG-CGUcaucaauacuuugUGUUAuUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUgGCA-------------ACAAUuAC- -5'
28278 3' -40.7 NC_005902.1 + 66954 0.68 1
Target:  5'- aCCaUUUAGCUCUAcacAUCGUUGaUGAUGu -3'
miRNA:   3'- -GG-AAAUUGAGGUa--UGGCAACaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 67425 0.73 0.999993
Target:  5'- uCCUUUAACUCUAUACUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 69406 0.67 1
Target:  5'- cCCUUUAACUUCAUAUCa---UUAAUGc -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGcaacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 71930 0.72 0.999999
Target:  5'- cCCUUUAAUUCCAcAUCGUcaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 73624 0.72 0.999999
Target:  5'- cCCUUUAACUCUuaa--GUUGUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGuauggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 75080 0.85 0.924664
Target:  5'- cCCUUUAACUCCuaAUG-CGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGG--UAUgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 76425 0.79 0.996092
Target:  5'- cUCUUUAAUUCCAcAgUGUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUgGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 76595 0.76 0.999663
Target:  5'- uCCUUUAAUUCUAUGCUGUUaUUGGUa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 81856 0.68 1
Target:  5'- cUCUUUAACUCCuaaGgCGUUaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAAcAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 81928 0.76 0.999796
Target:  5'- cCCUUUAACUCCGcaacaucauuaaUACUGUaaagUGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGCA----ACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 82107 0.81 0.988648
Target:  5'- cCUUUUAACUCCAUGuuGUUaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAAcAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 82186 0.79 0.997703
Target:  5'- uCCUUUAACUCCAUAUUGUUaucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 85122 0.66 1
Target:  5'- cCCUUauuaAACUCCAUgcgucaucaauaauGCUcuguGUUGUUGAUGa -3'
miRNA:   3'- -GGAAa---UUGAGGUA--------------UGG----CAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 90721 0.72 0.999999
Target:  5'- cCCUUUAACUCCAcAUCGUcaucGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAacaaUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.