miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 55243 0.76 0.999638
Target:  5'- cCCUUUAAUUCCAUGCUGUcaucaacgauacuuUGUguuauUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCA--------------ACA-----AUUAC- -5'
28278 3' -40.7 NC_005902.1 + 76595 0.76 0.999663
Target:  5'- uCCUUUAAUUCUAUGCUGUUaUUGGUa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 81928 0.76 0.999796
Target:  5'- cCCUUUAACUCCGcaacaucauuaaUACUGUaaagUGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGCA----ACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 51609 0.75 0.999881
Target:  5'- cCCUUUAAUUCCuaaugUGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGuaug-GCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 95702 0.74 0.999963
Target:  5'- ----aAACUCaAUGCUGUUGUUGAUGa -3'
miRNA:   3'- ggaaaUUGAGgUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 58573 0.74 0.999986
Target:  5'- cCCUUUAACUCCAUG-CGUcaucaauacuuugUGUUAuUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUgGCA-------------ACAAUuAC- -5'
28278 3' -40.7 NC_005902.1 + 112530 0.74 0.999986
Target:  5'- cCCUUUAACUCUAcACUGUUaUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAAcAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 67425 0.73 0.999993
Target:  5'- uCCUUUAACUCUAUACUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 136730 0.73 0.999995
Target:  5'- uUCUUUAACUCCAUGuuGUcauugacaaUGcUUAGUGu -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCA---------AC-AAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 146653 0.73 0.999997
Target:  5'- aCCUUUAACUCUAcAUUGUcGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAaCAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 140898 0.72 0.999998
Target:  5'- uCCUUaAACUCCAUGuuGUUGa----- -3'
miRNA:   3'- -GGAAaUUGAGGUAUggCAACaauuac -5'
28278 3' -40.7 NC_005902.1 + 23358 0.72 0.999999
Target:  5'- cCCUUUAAUUCUA---UGUUGUUAAUGc -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 149906 0.72 0.999999
Target:  5'- uCCUUUAACUUUA---UGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaugGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 144089 0.72 0.999999
Target:  5'- aCCaUUUAACUCUAUACCacUGUUGAc- -3'
miRNA:   3'- -GG-AAAUUGAGGUAUGGcaACAAUUac -5'
28278 3' -40.7 NC_005902.1 + 73624 0.72 0.999999
Target:  5'- cCCUUUAACUCUuaa--GUUGUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGuauggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 71930 0.72 0.999999
Target:  5'- cCCUUUAAUUCCAcAUCGUcaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 90721 0.72 0.999999
Target:  5'- cCCUUUAACUCCAcAUCGUcaucGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAacaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 37319 0.72 0.999999
Target:  5'- cCCUUUAACUCCAUGuuGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 96124 0.7 1
Target:  5'- cCCUUUAAUUCUAUAUCGUcaucAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 166125 0.7 1
Target:  5'- cCCUUUAACUUCAcaucauugaugaUACUuugUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGca-ACAAUUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.