miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28278 3' -40.7 NC_005902.1 + 73624 0.72 0.999999
Target:  5'- cCCUUUAACUCUuaa--GUUGUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGuauggCAACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 37319 0.72 0.999999
Target:  5'- cCCUUUAACUCCAUGuuGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 71930 0.72 0.999999
Target:  5'- cCCUUUAAUUCCAcAUCGUcaUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAacAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 90721 0.72 0.999999
Target:  5'- cCCUUUAACUCCAcAUCGUcaucGAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAacaaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 140898 0.72 0.999998
Target:  5'- uCCUUaAACUCCAUGuuGUUGa----- -3'
miRNA:   3'- -GGAAaUUGAGGUAUggCAACaauuac -5'
28278 3' -40.7 NC_005902.1 + 146653 0.73 0.999997
Target:  5'- aCCUUUAACUCUAcAUUGUcGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAaCAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 136730 0.73 0.999995
Target:  5'- uUCUUUAACUCCAUGuuGUcauugacaaUGcUUAGUGu -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCA---------AC-AAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 67425 0.73 0.999993
Target:  5'- uCCUUUAACUCUAUACUGUc------- -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAacaauuac -5'
28278 3' -40.7 NC_005902.1 + 112530 0.74 0.999986
Target:  5'- cCCUUUAACUCUAcACUGUUaUUGAUa -3'
miRNA:   3'- -GGAAAUUGAGGUaUGGCAAcAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 58573 0.74 0.999986
Target:  5'- cCCUUUAACUCCAUG-CGUcaucaauacuuugUGUUAuUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUgGCA-------------ACAAUuAC- -5'
28278 3' -40.7 NC_005902.1 + 95702 0.74 0.999963
Target:  5'- ----aAACUCaAUGCUGUUGUUGAUGa -3'
miRNA:   3'- ggaaaUUGAGgUAUGGCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 51609 0.75 0.999881
Target:  5'- cCCUUUAAUUCCuaaugUGUUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGuaug-GCAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 81928 0.76 0.999796
Target:  5'- cCCUUUAACUCCGcaacaucauuaaUACUGUaaagUGUUAAUa -3'
miRNA:   3'- -GGAAAUUGAGGU------------AUGGCA----ACAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 76595 0.76 0.999663
Target:  5'- uCCUUUAAUUCUAUGCUGUUaUUGGUa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCAAcAAUUAc -5'
28278 3' -40.7 NC_005902.1 + 55243 0.76 0.999638
Target:  5'- cCCUUUAAUUCCAUGCUGUcaucaacgauacuuUGUguuauUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUGGCA--------------ACA-----AUUAC- -5'
28278 3' -40.7 NC_005902.1 + 25183 0.77 0.999572
Target:  5'- uCCUUUAACU-CAUAUCaUUGUUGAUGa -3'
miRNA:   3'- -GGAAAUUGAgGUAUGGcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 15803 0.77 0.999156
Target:  5'- uCCUUUAACUCCuaagGCa-UUGUUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua--UGgcAACAAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 113782 0.78 0.998717
Target:  5'- uCCUUUGAUUCCAUGuuGUUaaUAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGUAUggCAAcaAUUAC- -5'
28278 3' -40.7 NC_005902.1 + 181206 0.78 0.998717
Target:  5'- cCCUUUAACUCCuaaAgCGUUGUcAAUGa -3'
miRNA:   3'- -GGAAAUUGAGGua-UgGCAACAaUUAC- -5'
28278 3' -40.7 NC_005902.1 + 6362 0.78 0.998097
Target:  5'- --gUUAACUCUAUGCUGUUGaUAAUGu -3'
miRNA:   3'- ggaAAUUGAGGUAUGGCAACaAUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.