miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 3' -45.1 NC_005902.1 + 58599 1.09 0.037573
Target:  5'- uUACCCUUUAACUCUACGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 58408 1.09 0.037573
Target:  5'- uUACCCUUUAACUCUACGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 25303 0.87 0.518342
Target:  5'- uUACCCUUUAACUCUAUGUAUCGUc-- -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGCGUAGUAacu -5'
28279 3' -45.1 NC_005902.1 + 162202 0.86 0.550457
Target:  5'- aUACCCUUUAAUUCUACGaCAUCAUcaaUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGC-GUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 16803 0.86 0.594149
Target:  5'- aACCCUUUAACUcCUAagGCAUCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 136635 0.85 0.605174
Target:  5'- uUAUCCUUUAACUUcAUGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 67677 0.85 0.605174
Target:  5'- aACCCUUUAACuUCUAagGCAUCAUUGAc -3'
miRNA:   3'- aUGGGAAAUUG-AGAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 17058 0.84 0.682462
Target:  5'- gUACCUUUUAACUCUAUGuUGUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGC-GUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 110419 0.83 0.71507
Target:  5'- aACCCUUUAACUC-AUGCAUCAUcaaUGAc -3'
miRNA:   3'- aUGGGAAAUUGAGaUGCGUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 167557 0.82 0.767606
Target:  5'- uUACCCUUUAAUUCcuaaaGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 176192 0.82 0.777737
Target:  5'- aACCCUUUAACUCUGCGCuguuAUCAa--- -3'
miRNA:   3'- aUGGGAAAUUGAGAUGCG----UAGUaacu -5'
28279 3' -45.1 NC_005902.1 + 90488 0.82 0.787715
Target:  5'- aACCCUUUAACUCUuaAgGCAUCAUcGAu -3'
miRNA:   3'- aUGGGAAAUUGAGA--UgCGUAGUAaCU- -5'
28279 3' -45.1 NC_005902.1 + 137848 0.82 0.787715
Target:  5'- aACCCUUUAACUCcuaaaGUAUCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGaug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 75082 0.82 0.787715
Target:  5'- aACCCUUUAACUCcuaAUGCGUUGUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGa--UGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 103934 0.81 0.80717
Target:  5'- -cCCCUUUAAUUCUuaaaGCAUCAUUGAu -3'
miRNA:   3'- auGGGAAAUUGAGAug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 112533 0.81 0.80717
Target:  5'- aUACCCUUUAACUCUACaCuGUUAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGcG-UAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 85400 0.81 0.825882
Target:  5'- aUACCCUUUAACUaauUUAUGuCAUCAUUGAc -3'
miRNA:   3'- -AUGGGAAAUUGA---GAUGC-GUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 58575 0.8 0.834935
Target:  5'- aACCCUUUAACUCcAUGCGUCAUc-- -3'
miRNA:   3'- aUGGGAAAUUGAGaUGCGUAGUAacu -5'
28279 3' -45.1 NC_005902.1 + 156460 0.8 0.834935
Target:  5'- aUAUCCUUUAAUUUcAUGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 100573 0.8 0.843771
Target:  5'- aACCCUUU-ACUCUuaAgGCAUCAUUGAu -3'
miRNA:   3'- aUGGGAAAuUGAGA--UgCGUAGUAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.