miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 3' -45.1 NC_005902.1 + 5566 0.67 0.99999
Target:  5'- aUACUCUUUAACUUuauaucaucaucaaUGauaugaaGCAUCAUUGAc -3'
miRNA:   3'- -AUGGGAAAUUGAG--------------AUg------CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 6174 0.69 0.99986
Target:  5'- aACUCUUUAACUCUuaAgGCAUUAUUu- -3'
miRNA:   3'- aUGGGAAAUUGAGA--UgCGUAGUAAcu -5'
28279 3' -45.1 NC_005902.1 + 7550 0.79 0.898897
Target:  5'- aACCCUUUAACUCUAaacacauuaGUAUUAUUGGu -3'
miRNA:   3'- aUGGGAAAUUGAGAUg--------CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 8479 0.67 0.999983
Target:  5'- aACCCUUUAACccCUcACGCAcCAaUGAu -3'
miRNA:   3'- aUGGGAAAUUGa-GA-UGCGUaGUaACU- -5'
28279 3' -45.1 NC_005902.1 + 8597 0.68 0.999893
Target:  5'- aUACUCUUUAACUCUACacCAUUGUUa- -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGc-GUAGUAAcu -5'
28279 3' -45.1 NC_005902.1 + 10091 0.67 0.999991
Target:  5'- --aCCUUUAAC-CUaaAUGUAUCAUUGGu -3'
miRNA:   3'- augGGAAAUUGaGA--UGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 10457 0.79 0.88442
Target:  5'- uUACUCUUUAGCUCcAUGCAUCAUcGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGCGUAGUAaCU- -5'
28279 3' -45.1 NC_005902.1 + 10797 0.66 0.999994
Target:  5'- aAUCUUUUAACUUUuaaaGUAUCGUUGGu -3'
miRNA:   3'- aUGGGAAAUUGAGAug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 11064 0.67 0.999983
Target:  5'- aACUaUUUAACUcCUAagGCAUCAUUGAu -3'
miRNA:   3'- aUGGgAAAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 11437 0.66 0.999997
Target:  5'- aACUCUUUAAUUCUuaaaaaGUAUUGUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGAug----CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 13056 0.75 0.979101
Target:  5'- cUAUCCUUUAACUCcACaucaucaaugacaaaGCGUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUG---------------CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 16803 0.86 0.594149
Target:  5'- aACCCUUUAACUcCUAagGCAUCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 17058 0.84 0.682462
Target:  5'- gUACCUUUUAACUCUAUGuUGUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGC-GUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 20211 0.7 0.999394
Target:  5'- aUGCCUUaggagUUAACUcCUAagGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGA-----AAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 20424 0.7 0.999394
Target:  5'- aUGCCUUaggagUUAACUcCUAagGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGA-----AAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 20605 0.71 0.998851
Target:  5'- aUACCCcUUAACUgaACGCAUUAcagUGAc -3'
miRNA:   3'- -AUGGGaAAUUGAgaUGCGUAGUa--ACU- -5'
28279 3' -45.1 NC_005902.1 + 23356 0.69 0.999818
Target:  5'- aACCCUUUAAUUCUAUGUuguuaaugcaguGUCAUc-- -3'
miRNA:   3'- aUGGGAAAUUGAGAUGCG------------UAGUAacu -5'
28279 3' -45.1 NC_005902.1 + 23602 0.71 0.998851
Target:  5'- aGCCCUUUAACUUUuaaaGCAUUGUuaUGAc -3'
miRNA:   3'- aUGGGAAAUUGAGAug--CGUAGUA--ACU- -5'
28279 3' -45.1 NC_005902.1 + 25068 0.73 0.994277
Target:  5'- -cCCCUUUAACUCcuaaaGCGUUGUUGAc -3'
miRNA:   3'- auGGGAAAUUGAGaug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 25117 0.75 0.978111
Target:  5'- aUACCCUUUAACUCUAUGCu------- -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGCGuaguaacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.