miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28279 3' -45.1 NC_005902.1 + 58599 1.09 0.037573
Target:  5'- uUACCCUUUAACUCUACGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 26204 0.76 0.958851
Target:  5'- aACCCcUUAACUcCUAagGCAUCAUUGAc -3'
miRNA:   3'- aUGGGaAAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 63107 0.76 0.966239
Target:  5'- aACCCUUUAACUUUuaAgGCAUCAUcauUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGA--UgCGUAGUA---ACU- -5'
28279 3' -45.1 NC_005902.1 + 67061 0.66 0.999999
Target:  5'- uUACCCUUUAACUCcACauuauCAUCAa--- -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGc----GUAGUaacu -5'
28279 3' -45.1 NC_005902.1 + 103934 0.81 0.80717
Target:  5'- -cCCCUUUAAUUCUuaaaGCAUCAUUGAu -3'
miRNA:   3'- auGGGAAAUUGAGAug--CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 85400 0.81 0.825882
Target:  5'- aUACCCUUUAACUaauUUAUGuCAUCAUUGAc -3'
miRNA:   3'- -AUGGGAAAUUGA---GAUGC-GUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 48317 0.8 0.852383
Target:  5'- aUACCCUUUAAUUCcuuUAUGCAUCAaUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAG---AUGCGUAGUaACU- -5'
28279 3' -45.1 NC_005902.1 + 175020 0.8 0.852383
Target:  5'- aACCCUUUAACUC-AUGCAUCAUc-- -3'
miRNA:   3'- aUGGGAAAUUGAGaUGCGUAGUAacu -5'
28279 3' -45.1 NC_005902.1 + 157915 0.79 0.876787
Target:  5'- aUACCCUUUAACUCcAUGUGUCAUcGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGCGUAGUAaCU- -5'
28279 3' -45.1 NC_005902.1 + 184443 0.77 0.942906
Target:  5'- aACCCUUUAACUCUuaagguguuguuaauGaugugaaGCAUCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGA---------------Ug------CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 7550 0.79 0.898897
Target:  5'- aACCCUUUAACUCUAaacacauuaGUAUUAUUGGu -3'
miRNA:   3'- aUGGGAAAUUGAGAUg--------CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 68236 0.79 0.876787
Target:  5'- aACCCUUUAACUCU--GCAUCAUUa- -3'
miRNA:   3'- aUGGGAAAUUGAGAugCGUAGUAAcu -5'
28279 3' -45.1 NC_005902.1 + 16803 0.86 0.594149
Target:  5'- aACCCUUUAACUcCUAagGCAUCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGA-GAUg-CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 66953 0.79 0.898897
Target:  5'- aACCaUUUAGCUCUACaCAUCGUUGAu -3'
miRNA:   3'- aUGGgAAAUUGAGAUGcGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 136635 0.85 0.605174
Target:  5'- uUAUCCUUUAACUUcAUGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGCGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 167373 0.8 0.864046
Target:  5'- aUACCCUUUAACUCUacacuguugccagugACguaGCAUCAUUGGc -3'
miRNA:   3'- -AUGGGAAAUUGAGA---------------UG---CGUAGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 42295 0.78 0.918575
Target:  5'- uUACCUUUUAAUUCUAUGUGUCAUcGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGAUGCGUAGUAaCU- -5'
28279 3' -45.1 NC_005902.1 + 45010 0.76 0.966239
Target:  5'- aACCCUUUAACUUaAgGCAgCAUUGAu -3'
miRNA:   3'- aUGGGAAAUUGAGaUgCGUaGUAACU- -5'
28279 3' -45.1 NC_005902.1 + 90488 0.82 0.787715
Target:  5'- aACCCUUUAACUCUuaAgGCAUCAUcGAu -3'
miRNA:   3'- aUGGGAAAUUGAGA--UgCGUAGUAaCU- -5'
28279 3' -45.1 NC_005902.1 + 156460 0.8 0.834935
Target:  5'- aUAUCCUUUAAUUUcAUGCAUCAUUGAu -3'
miRNA:   3'- -AUGGGAAAUUGAGaUGCGUAGUAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.