miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 71716 1.06 0.09976
Target:  5'- cAUCAUCAAUGACGAUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 90507 1.05 0.108934
Target:  5'- cAUCAUCGAUGACGAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 142317 0.9 0.567753
Target:  5'- cAUCAUCGAUGACaAUGUGGGAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 114776 0.89 0.613061
Target:  5'- uGUCAUCGGUGACGAUGUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 136334 0.84 0.819349
Target:  5'- uGUCAUUAAUGAUaGUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 12840 0.84 0.828825
Target:  5'- uUUGUCAuUGAUGAUGUGGAGUUAAAg -3'
miRNA:   3'- uAGUAGUuACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 76560 0.83 0.872674
Target:  5'- aGUCGUUAAUGAUcAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 54905 0.81 0.939798
Target:  5'- cAUCAUCAAUGACaAUGcGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACaCCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 71895 0.81 0.922734
Target:  5'- cAUCAUCAAUGACG-UGUuaGGAGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCuACA--CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 15968 0.8 0.954221
Target:  5'- --uGUCGuUGAUGAUGUGGAGUUAAAg -3'
miRNA:   3'- uagUAGUuACUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 104298 0.79 0.969201
Target:  5'- cAUCAUUGAUGACGGUGUgagguggGGggUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACA-------CCuuAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 184481 0.78 0.980783
Target:  5'- cAUCAUUGAUGAUGAUGUGaAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 75788 0.78 0.985076
Target:  5'- cAUUGUUAAUGAC-AUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 91085 0.77 0.990094
Target:  5'- cAUUAUUGAUGAUG-UGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 169090 0.76 0.994613
Target:  5'- cGUCGUUGAUGACaGUGUGGAGUa--- -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAauuu -5'
28281 5' -42.4 NC_005902.1 + 29739 0.75 0.997756
Target:  5'- cAUCAUUGAUGACaccGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuaCACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 67279 0.74 0.998762
Target:  5'- uGUUGUUGAUGAUaAUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 143761 0.74 0.998762
Target:  5'- uGUCAUUGAcaAUGAUGUGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUacUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 163778 0.74 0.999193
Target:  5'- uGUCAUCAAUGAUaAUGUuGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 116975 0.73 0.999597
Target:  5'- uGUCGUCAAUGAUGuuuuaGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.