miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 184481 0.78 0.980783
Target:  5'- cAUCAUUGAUGAUGAUGUGaAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 169090 0.76 0.994613
Target:  5'- cGUCGUUGAUGACaGUGUGGAGUa--- -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAauuu -5'
28281 5' -42.4 NC_005902.1 + 167339 0.66 1
Target:  5'- uAUUAUCAAUGAUGcuuuaGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 165994 0.69 0.999998
Target:  5'- uAUCAUCAAUGAUGuuuuaGGAGUUAu- -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUuu -5'
28281 5' -42.4 NC_005902.1 + 163778 0.74 0.999193
Target:  5'- uGUCAUCAAUGAUaAUGUuGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 161990 0.66 1
Target:  5'- uAUCAUCAAUGACaccuuaGGUGUuaaaGGAUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUG------CUACAc---CUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 158151 0.73 0.99934
Target:  5'- uAUCAUCAAUGAcacaaagcaucauCGAUGacacaUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACU-------------GCUAC-----ACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 157933 0.68 1
Target:  5'- uGUCAUCGAUGAUGcuuUGUGucAUUGAu -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 154673 0.7 0.999995
Target:  5'- cAUUAUCAAcaauacuucuguuauUGAUGAUGUuuGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUU---------------ACUGCUACA--CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 149870 0.68 1
Target:  5'- cAUCGUUGAUGACaAUGUaGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACAcCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 149173 0.67 1
Target:  5'- cAUCAUCGAUGACauuuuaGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGcuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 143922 0.66 1
Target:  5'- cAUCAUCAAUGAC--UGUGaAGUUGGGg -3'
miRNA:   3'- -UAGUAGUUACUGcuACACcUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 143761 0.74 0.998762
Target:  5'- uGUCAUUGAcaAUGAUGUGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUacUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 142317 0.9 0.567753
Target:  5'- cAUCAUCGAUGACaAUGUGGGAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 140047 0.68 1
Target:  5'- cGUCAUCAAUGAUGcaagGcgucauugacaacaUGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUGCua--C--------------ACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 136945 0.67 1
Target:  5'- cAUUGUCAAUGACaacaUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcuacACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 136334 0.84 0.819349
Target:  5'- uGUCAUUAAUGAUaGUGUGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 123048 0.72 0.999812
Target:  5'- -aCGUCAuUGAaaGUGUGGAAUUAAAg -3'
miRNA:   3'- uaGUAGUuACUgcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 122823 0.7 0.999994
Target:  5'- cAUCAUCGAUGAUGcuuUGUGuuGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 118930 0.71 0.999939
Target:  5'- uGUCAUUA---AUGGUGUGGAGUUAAGu -3'
miRNA:   3'- -UAGUAGUuacUGCUACACCUUAAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.