miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28281 5' -42.4 NC_005902.1 + 3343 0.68 1
Target:  5'- cAUUGUCAGUGACGuauacGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 29541 0.68 0.999999
Target:  5'- uGUCAUCAAUGAUGcuuUGUGucAUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 50430 0.69 0.999999
Target:  5'- cAUCAUCGAUGACauauuUGGAGUUAu- -3'
miRNA:   3'- -UAGUAGUUACUGcuac-ACCUUAAUuu -5'
28281 5' -42.4 NC_005902.1 + 29064 0.68 0.999999
Target:  5'- cAUCAUCAGcaACaAUGUGGAGUUAAu -3'
miRNA:   3'- -UAGUAGUUacUGcUACACCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 42362 0.69 0.999999
Target:  5'- uAUUGUCAAUGAC-AUGUuuGGAGUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGcUACA--CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 165994 0.69 0.999998
Target:  5'- uAUCAUCAAUGAUGuuuuaGGAGUUAu- -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUuu -5'
28281 5' -42.4 NC_005902.1 + 50628 0.69 0.999997
Target:  5'- uGUCAUCGAUGAUGccuuaGGAAUUAAc -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUu -5'
28281 5' -42.4 NC_005902.1 + 114956 0.69 0.999996
Target:  5'- uAUUAUCAAUGAUGccuUG-GGAGUUAGGg -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACaCCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 154673 0.7 0.999995
Target:  5'- cAUUAUCAAcaauacuucuguuauUGAUGAUGUuuGGAGUUAAAg -3'
miRNA:   3'- -UAGUAGUU---------------ACUGCUACA--CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 99893 0.7 0.999994
Target:  5'- cGUCAUCA---ACaAUGUGGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUuacUGcUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 95909 0.7 0.999994
Target:  5'- uGUCAUUGAUGACGAUauaGAAUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGCUAcacCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 122823 0.7 0.999994
Target:  5'- cAUCAUCGAUGAUGcuuUGUGuuGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCu--ACACcuUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 66970 0.7 0.999994
Target:  5'- cAUCGUUGAUGAUG-UGUGGAGcUAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuACACCUUaAUUu -5'
28281 5' -42.4 NC_005902.1 + 102184 0.7 0.999992
Target:  5'- cAUUAUCAAUGACGAUuuaGGAGUa--- -3'
miRNA:   3'- -UAGUAGUUACUGCUAca-CCUUAauuu -5'
28281 5' -42.4 NC_005902.1 + 26422 0.7 0.999988
Target:  5'- cAUCGUCAAUGAUGccuuaGGAGUUAAGg -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 11410 0.7 0.999979
Target:  5'- cAUCAUCAAUGACauaaagcaucaacaAUGUGGAuUUAAAg -3'
miRNA:   3'- -UAGUAGUUACUGc-------------UACACCUuAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 50019 0.7 0.999976
Target:  5'- uGUCAUUGAUGAU-AUGUGGAAUUu-- -3'
miRNA:   3'- -UAGUAGUUACUGcUACACCUUAAuuu -5'
28281 5' -42.4 NC_005902.1 + 11282 0.71 0.999955
Target:  5'- uAUCAUCAAUGAUGccuuaGGAGUUAAAu -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 118930 0.71 0.999939
Target:  5'- uGUCAUUA---AUGGUGUGGAGUUAAGu -3'
miRNA:   3'- -UAGUAGUuacUGCUACACCUUAAUUU- -5'
28281 5' -42.4 NC_005902.1 + 37354 0.72 0.999891
Target:  5'- cGUCAUCGAUGAUGccuuaGGAGUUAAAa -3'
miRNA:   3'- -UAGUAGUUACUGCuaca-CCUUAAUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.