miRNA display CGI


Results 21 - 40 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 3358 0.67 1
Target:  5'- cCAACAAUGCUaauaCAUUGUcaGUGACg -3'
miRNA:   3'- -GUUGUUACGAaac-GUAACAacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 10686 0.68 1
Target:  5'- uCGAUAAUGCUUUGUGUauc-GAUGAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 125948 0.69 1
Target:  5'- uUAACuucuaag-GCAUUGUUGAUGACa -3'
miRNA:   3'- -GUUGuuacgaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 176169 0.66 1
Target:  5'- uCAACAccacaaaGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUuacgaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 106300 0.69 1
Target:  5'- --uUAAUGCaaaGCAUcGUUGAUGACa -3'
miRNA:   3'- guuGUUACGaaaCGUAaCAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 155009 0.7 1
Target:  5'- uCGAUGAUGCUUUGCAUaaucaAUGACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 81027 0.7 1
Target:  5'- cCAACuAUGCUaaUGUGUUGUUGGUAc- -3'
miRNA:   3'- -GUUGuUACGAa-ACGUAACAACUAUug -5'
28282 5' -39.7 NC_005902.1 + 95698 0.66 1
Target:  5'- --uCAAUGCU----GUUGUUGAUGAUg -3'
miRNA:   3'- guuGUUACGAaacgUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 81583 0.7 1
Target:  5'- uCGAUGAUaCUUUGUggUGUUGAUAAUg -3'
miRNA:   3'- -GUUGUUAcGAAACGuaACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 75981 0.66 1
Target:  5'- uUAACAAUGCguugUGuCAUUGaUGGUGc- -3'
miRNA:   3'- -GUUGUUACGaa--AC-GUAACaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 134458 0.67 1
Target:  5'- uUAACu---CUUaaaGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGuuacGAAa--CGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 157938 0.72 0.999999
Target:  5'- uCGAUGAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 75057 0.73 0.999999
Target:  5'- uGAUGAcGCUUUaCAUUGUUGAUGAUa -3'
miRNA:   3'- gUUGUUaCGAAAcGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 55369 0.72 0.999999
Target:  5'- aCGAUAAgcaccCUUuaauucUGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUac---GAA------ACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 131015 0.73 0.999998
Target:  5'- uCAACAA-----UGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUacgaaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 131218 0.73 0.999998
Target:  5'- uCAACAA-----UGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUacgaaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 180985 0.73 0.999996
Target:  5'- uCAuCAAUGauaugaaGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUuGUUACgaaa---CGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 48187 0.74 0.999995
Target:  5'- uCAAUGAUGCUUUGUAUcaucGAUGACg -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 87029 0.74 0.999995
Target:  5'- uGAUAAcGCUUUGUGUUGUcaaUGAUGAUa -3'
miRNA:   3'- gUUGUUaCGAAACGUAACA---ACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 147571 0.74 0.999995
Target:  5'- uCAACAAUGCUUUGUAUUaauccuGUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaac--UAUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.