miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 48187 0.74 0.999995
Target:  5'- uCAAUGAUGCUUUGUAUcaucGAUGACg -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 51502 0.67 1
Target:  5'- uUAGCAAUGUUUUGUAUUGa------- -3'
miRNA:   3'- -GUUGUUACGAAACGUAACaacuauug -5'
28282 5' -39.7 NC_005902.1 + 117119 0.7 1
Target:  5'- aCAAUGAUGCUUUGUAUcaucGAUAAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 50005 0.75 0.999941
Target:  5'- uCAAUAAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 85019 0.68 1
Target:  5'- gGAUGAUaCUUUGCAUUGUUaAUAAUa -3'
miRNA:   3'- gUUGUUAcGAAACGUAACAAcUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 97261 0.67 1
Target:  5'- uCAAUGAUGCaucGUAUUGUUGAcAAUa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUaUUG- -5'
28282 5' -39.7 NC_005902.1 + 175041 0.67 1
Target:  5'- uCAAUAAUGCaaag-AUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUACGaaacgUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 3150 0.76 0.999893
Target:  5'- uGACAAUGUaUUaGCAUUGUUGGUAc- -3'
miRNA:   3'- gUUGUUACGaAA-CGUAACAACUAUug -5'
28282 5' -39.7 NC_005902.1 + 91950 0.78 0.99918
Target:  5'- uGACAAUGCUUUGUGUcaUUGAUGAUg -3'
miRNA:   3'- gUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 147571 0.74 0.999995
Target:  5'- uCAACAAUGCUUUGUAUUaauccuGUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaac--UAUUG- -5'
28282 5' -39.7 NC_005902.1 + 157938 0.72 0.999999
Target:  5'- uCGAUGAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 122941 0.67 1
Target:  5'- uCAAUAAUGCUUUGUAUUau---UAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaacuAUUG- -5'
28282 5' -39.7 NC_005902.1 + 169993 0.9 0.779932
Target:  5'- aUAACAAUGUgaaGCAUUGUUGAUGACa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 78380 0.88 0.84863
Target:  5'- uGAUGAUGCUaaGCGUUGUUGAUGACa -3'
miRNA:   3'- gUUGUUACGAaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 89120 0.86 0.924872
Target:  5'- uCGAUAAUGCUUUGUGUUGUcGAUGAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 47334 0.79 0.997206
Target:  5'- gUAAUAAUGCUUUGCGUUGUUaAUAc- -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAAcUAUug -5'
28282 5' -39.7 NC_005902.1 + 175248 0.77 0.999685
Target:  5'- uCAACAAU-CUUUGCAUUaUUGAUGAUg -3'
miRNA:   3'- -GUUGUUAcGAAACGUAAcAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 81027 0.7 1
Target:  5'- cCAACuAUGCUaaUGUGUUGUUGGUAc- -3'
miRNA:   3'- -GUUGuUACGAa-ACGUAACAACUAUug -5'
28282 5' -39.7 NC_005902.1 + 81583 0.7 1
Target:  5'- uCGAUGAUaCUUUGUggUGUUGAUAAUg -3'
miRNA:   3'- -GUUGUUAcGAAACGuaACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 20651 0.71 1
Target:  5'- uCAACGAcaCUUUGCAUUaUUGAUGAUg -3'
miRNA:   3'- -GUUGUUacGAAACGUAAcAACUAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.