miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 78779 1.14 0.077297
Target:  5'- uCAACAAUGCUUUGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 149986 0.72 1
Target:  5'- uGACAcuaa--UGCAUUGUUGAUGACa -3'
miRNA:   3'- gUUGUuacgaaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 117119 0.7 1
Target:  5'- aCAAUGAUGCUUUGUAUcaucGAUAAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 5334 0.66 1
Target:  5'- uCAAUGAUGCUUcauauCAUUGaUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAac---GUAACaACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 26343 0.86 0.911984
Target:  5'- uCAAUGAcGCUUUGUAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUaCGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 122853 0.85 0.936531
Target:  5'- uCAAUGAcGUUUUGCAUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUaCGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 50548 0.79 0.997686
Target:  5'- aCAGCAAUaCUgaUGUAUUGUUGGUAACa -3'
miRNA:   3'- -GUUGUUAcGAa-ACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 36332 0.78 0.998733
Target:  5'- -uAUAAUGCUUUGUAUUGacGAUAACc -3'
miRNA:   3'- guUGUUACGAAACGUAACaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 50005 0.75 0.999941
Target:  5'- uCAAUAAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 157938 0.72 0.999999
Target:  5'- uCGAUGAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 147571 0.74 0.999995
Target:  5'- uCAACAAUGCUUUGUAUUaauccuGUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaac--UAUUG- -5'
28282 5' -39.7 NC_005902.1 + 3150 0.76 0.999893
Target:  5'- uGACAAUGUaUUaGCAUUGUUGGUAc- -3'
miRNA:   3'- gUUGUUACGaAA-CGUAACAACUAUug -5'
28282 5' -39.7 NC_005902.1 + 175961 0.99 0.384959
Target:  5'- uCAACAAUGCUUUGUggUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGuaACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 87029 0.74 0.999995
Target:  5'- uGAUAAcGCUUUGUGUUGUcaaUGAUGAUa -3'
miRNA:   3'- gUUGUUaCGAAACGUAACA---ACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 42318 0.91 0.747686
Target:  5'- uCGAUGAUGCUUUGCAUcGUUGAUAAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAaCAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 91950 0.78 0.99918
Target:  5'- uGACAAUGCUUUGUGUcaUUGAUGAUg -3'
miRNA:   3'- gUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 131015 0.73 0.999998
Target:  5'- uCAACAA-----UGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUacgaaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 136752 0.72 1
Target:  5'- uGACAAUGCUUaGUGUUGUcaAUGACa -3'
miRNA:   3'- gUUGUUACGAAaCGUAACAacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 85145 0.88 0.857521
Target:  5'- uCAAUAAUGCUcUGUGUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUACGAaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 106095 0.83 0.977183
Target:  5'- uCAACGAUGCUUUGCAUUaaUGAUGc- -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaACUAUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.