miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 75981 0.66 1
Target:  5'- uUAACAAUGCguugUGuCAUUGaUGGUGc- -3'
miRNA:   3'- -GUUGUUACGaa--AC-GUAACaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 106021 0.66 1
Target:  5'- uCAAUGAUGCUUuaUGuCAUUGgUGAUGu- -3'
miRNA:   3'- -GUUGUUACGAA--AC-GUAACaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 5334 0.66 1
Target:  5'- uCAAUGAUGCUUcauauCAUUGaUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAac---GUAACaACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 95698 0.66 1
Target:  5'- --uCAAUGCU----GUUGUUGAUGAUg -3'
miRNA:   3'- guuGUUACGAaacgUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 176169 0.66 1
Target:  5'- uCAACAccacaaaGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUuacgaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 3358 0.67 1
Target:  5'- cCAACAAUGCUaauaCAUUGUcaGUGACg -3'
miRNA:   3'- -GUUGUUACGAaac-GUAACAacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 97261 0.67 1
Target:  5'- uCAAUGAUGCaucGUAUUGUUGAcAAUa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUaUUG- -5'
28282 5' -39.7 NC_005902.1 + 51502 0.67 1
Target:  5'- uUAGCAAUGUUUUGUAUUGa------- -3'
miRNA:   3'- -GUUGUUACGAAACGUAACaacuauug -5'
28282 5' -39.7 NC_005902.1 + 175041 0.67 1
Target:  5'- uCAAUAAUGCaaag-AUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUACGaaacgUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 55098 0.67 1
Target:  5'- uGAUGAUGCUUUGUGUUGaguauAUAGCu -3'
miRNA:   3'- gUUGUUACGAAACGUAACaac--UAUUG- -5'
28282 5' -39.7 NC_005902.1 + 122941 0.67 1
Target:  5'- uCAAUAAUGCUUUGUAUUau---UAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaacuAUUG- -5'
28282 5' -39.7 NC_005902.1 + 52508 0.67 1
Target:  5'- uUAAUGAUGCUaaGCAUUGUcaAUGACa -3'
miRNA:   3'- -GUUGUUACGAaaCGUAACAacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 134458 0.67 1
Target:  5'- uUAACu---CUUaaaGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGuuacGAAa--CGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 169785 0.68 1
Target:  5'- uCAACAAUGCUUcaCAUUGUUauaGAUAu- -3'
miRNA:   3'- -GUUGUUACGAAacGUAACAA---CUAUug -5'
28282 5' -39.7 NC_005902.1 + 85019 0.68 1
Target:  5'- gGAUGAUaCUUUGCAUUGUUaAUAAUa -3'
miRNA:   3'- gUUGUUAcGAAACGUAACAAcUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 180774 0.68 1
Target:  5'- uCAACAAUGCUU--CAUaucaUUGAUGACa -3'
miRNA:   3'- -GUUGUUACGAAacGUAac--AACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 10686 0.68 1
Target:  5'- uCGAUAAUGCUUUGUGUauc-GAUGAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 63452 0.69 1
Target:  5'- --uCAAUGCUUUGCGUcGUcGAUGc- -3'
miRNA:   3'- guuGUUACGAAACGUAaCAaCUAUug -5'
28282 5' -39.7 NC_005902.1 + 182341 0.69 1
Target:  5'- uCAACAAU-CUgUGU-UUGUUGAUAGCa -3'
miRNA:   3'- -GUUGUUAcGAaACGuAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 125948 0.69 1
Target:  5'- uUAACuucuaag-GCAUUGUUGAUGACa -3'
miRNA:   3'- -GUUGuuacgaaaCGUAACAACUAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.