miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 78779 1.14 0.077297
Target:  5'- uCAACAAUGCUUUGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 175961 0.99 0.384959
Target:  5'- uCAACAAUGCUUUGUggUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGuaACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 78986 0.93 0.633738
Target:  5'- uCAACAAUGCaaaGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 42318 0.91 0.747686
Target:  5'- uCGAUGAUGCUUUGCAUcGUUGAUAAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAaCAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 174894 0.9 0.769336
Target:  5'- uCAAUAAcGCUUUGUGUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUaCGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 169993 0.9 0.779932
Target:  5'- aUAACAAUGUgaaGCAUUGUUGAUGACa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 78380 0.88 0.84863
Target:  5'- uGAUGAUGCUaaGCGUUGUUGAUGACa -3'
miRNA:   3'- gUUGUUACGAaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 85145 0.88 0.857521
Target:  5'- uCAAUAAUGCUcUGUGUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUACGAaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 26343 0.86 0.911984
Target:  5'- uCAAUGAcGCUUUGUAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUaCGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 89120 0.86 0.924872
Target:  5'- uCGAUAAUGCUUUGUGUUGUcGAUGAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 122853 0.85 0.936531
Target:  5'- uCAAUGAcGUUUUGCAUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUaCGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 106095 0.83 0.977183
Target:  5'- uCAACGAUGCUUUGCAUUaaUGAUGc- -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 47334 0.79 0.997206
Target:  5'- gUAAUAAUGCUUUGCGUUGUUaAUAc- -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAAcUAUug -5'
28282 5' -39.7 NC_005902.1 + 50548 0.79 0.997686
Target:  5'- aCAGCAAUaCUgaUGUAUUGUUGGUAACa -3'
miRNA:   3'- -GUUGUUAcGAa-ACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 36332 0.78 0.998733
Target:  5'- -uAUAAUGCUUUGUAUUGacGAUAACc -3'
miRNA:   3'- guUGUUACGAAACGUAACaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 91950 0.78 0.99918
Target:  5'- uGACAAUGCUUUGUGUcaUUGAUGAUg -3'
miRNA:   3'- gUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 175248 0.77 0.999685
Target:  5'- uCAACAAU-CUUUGCAUUaUUGAUGAUg -3'
miRNA:   3'- -GUUGUUAcGAAACGUAAcAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 110205 0.77 0.999685
Target:  5'- uCAAUAAUGCUUUGUGUUauuaaUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAca---ACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 3150 0.76 0.999893
Target:  5'- uGACAAUGUaUUaGCAUUGUUGGUAc- -3'
miRNA:   3'- gUUGUUACGaAA-CGUAACAACUAUug -5'
28282 5' -39.7 NC_005902.1 + 50005 0.75 0.999941
Target:  5'- uCAAUAAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.