miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 3150 0.76 0.999893
Target:  5'- uGACAAUGUaUUaGCAUUGUUGGUAc- -3'
miRNA:   3'- gUUGUUACGaAA-CGUAACAACUAUug -5'
28282 5' -39.7 NC_005902.1 + 3358 0.67 1
Target:  5'- cCAACAAUGCUaauaCAUUGUcaGUGACg -3'
miRNA:   3'- -GUUGUUACGAaac-GUAACAacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 5334 0.66 1
Target:  5'- uCAAUGAUGCUUcauauCAUUGaUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAac---GUAACaACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 10686 0.68 1
Target:  5'- uCGAUAAUGCUUUGUGUauc-GAUGAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 20651 0.71 1
Target:  5'- uCAACGAcaCUUUGCAUUaUUGAUGAUg -3'
miRNA:   3'- -GUUGUUacGAAACGUAAcAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 26343 0.86 0.911984
Target:  5'- uCAAUGAcGCUUUGUAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUaCGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 36332 0.78 0.998733
Target:  5'- -uAUAAUGCUUUGUAUUGacGAUAACc -3'
miRNA:   3'- guUGUUACGAAACGUAACaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 42318 0.91 0.747686
Target:  5'- uCGAUGAUGCUUUGCAUcGUUGAUAAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAaCAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 47334 0.79 0.997206
Target:  5'- gUAAUAAUGCUUUGCGUUGUUaAUAc- -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAAcUAUug -5'
28282 5' -39.7 NC_005902.1 + 48187 0.74 0.999995
Target:  5'- uCAAUGAUGCUUUGUAUcaucGAUGACg -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 48737 0.74 0.999989
Target:  5'- uCAACAAUGUUUUGUGUUGUUaAUAc- -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAAcUAUug -5'
28282 5' -39.7 NC_005902.1 + 50005 0.75 0.999941
Target:  5'- uCAAUAAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 50548 0.79 0.997686
Target:  5'- aCAGCAAUaCUgaUGUAUUGUUGGUAACa -3'
miRNA:   3'- -GUUGUUAcGAa-ACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 51502 0.67 1
Target:  5'- uUAGCAAUGUUUUGUAUUGa------- -3'
miRNA:   3'- -GUUGUUACGAAACGUAACaacuauug -5'
28282 5' -39.7 NC_005902.1 + 52508 0.67 1
Target:  5'- uUAAUGAUGCUaaGCAUUGUcaAUGACa -3'
miRNA:   3'- -GUUGUUACGAaaCGUAACAacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 55098 0.67 1
Target:  5'- uGAUGAUGCUUUGUGUUGaguauAUAGCu -3'
miRNA:   3'- gUUGUUACGAAACGUAACaac--UAUUG- -5'
28282 5' -39.7 NC_005902.1 + 55369 0.72 0.999999
Target:  5'- aCGAUAAgcaccCUUuaauucUGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUac---GAA------ACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 63452 0.69 1
Target:  5'- --uCAAUGCUUUGCGUcGUcGAUGc- -3'
miRNA:   3'- guuGUUACGAAACGUAaCAaCUAUug -5'
28282 5' -39.7 NC_005902.1 + 67650 0.72 1
Target:  5'- aCAGCAuaaa---GCAUUGUUGAUGACa -3'
miRNA:   3'- -GUUGUuacgaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 75057 0.73 0.999999
Target:  5'- uGAUGAcGCUUUaCAUUGUUGAUGAUa -3'
miRNA:   3'- gUUGUUaCGAAAcGUAACAACUAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.