miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 75981 0.66 1
Target:  5'- uUAACAAUGCguugUGuCAUUGaUGGUGc- -3'
miRNA:   3'- -GUUGUUACGaa--AC-GUAACaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 78380 0.88 0.84863
Target:  5'- uGAUGAUGCUaaGCGUUGUUGAUGACa -3'
miRNA:   3'- gUUGUUACGAaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 78779 1.14 0.077297
Target:  5'- uCAACAAUGCUUUGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 78986 0.93 0.633738
Target:  5'- uCAACAAUGCaaaGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 81027 0.7 1
Target:  5'- cCAACuAUGCUaaUGUGUUGUUGGUAc- -3'
miRNA:   3'- -GUUGuUACGAa-ACGUAACAACUAUug -5'
28282 5' -39.7 NC_005902.1 + 81088 0.75 0.999957
Target:  5'- uCAGCAAUGCUUUaUGUUaUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAAcGUAAcAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 81583 0.7 1
Target:  5'- uCGAUGAUaCUUUGUggUGUUGAUAAUg -3'
miRNA:   3'- -GUUGUUAcGAAACGuaACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 85019 0.68 1
Target:  5'- gGAUGAUaCUUUGCAUUGUUaAUAAUa -3'
miRNA:   3'- gUUGUUAcGAAACGUAACAAcUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 85145 0.88 0.857521
Target:  5'- uCAAUAAUGCUcUGUGUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUACGAaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 87029 0.74 0.999995
Target:  5'- uGAUAAcGCUUUGUGUUGUcaaUGAUGAUa -3'
miRNA:   3'- gUUGUUaCGAAACGUAACA---ACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 89120 0.86 0.924872
Target:  5'- uCGAUAAUGCUUUGUGUUGUcGAUGAUg -3'
miRNA:   3'- -GUUGUUACGAAACGUAACAaCUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 91950 0.78 0.99918
Target:  5'- uGACAAUGCUUUGUGUcaUUGAUGAUg -3'
miRNA:   3'- gUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 92104 0.69 1
Target:  5'- uCAAUAAUGCUUuaUGuCAUUGaUGAUAc- -3'
miRNA:   3'- -GUUGUUACGAA--AC-GUAACaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 95698 0.66 1
Target:  5'- --uCAAUGCU----GUUGUUGAUGAUg -3'
miRNA:   3'- guuGUUACGAaacgUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 97261 0.67 1
Target:  5'- uCAAUGAUGCaucGUAUUGUUGAcAAUa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUaUUG- -5'
28282 5' -39.7 NC_005902.1 + 106021 0.66 1
Target:  5'- uCAAUGAUGCUUuaUGuCAUUGgUGAUGu- -3'
miRNA:   3'- -GUUGUUACGAA--AC-GUAACaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 106095 0.83 0.977183
Target:  5'- uCAACGAUGCUUUGCAUUaaUGAUGc- -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaACUAUug -5'
28282 5' -39.7 NC_005902.1 + 106300 0.69 1
Target:  5'- --uUAAUGCaaaGCAUcGUUGAUGACa -3'
miRNA:   3'- guuGUUACGaaaCGUAaCAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 110205 0.77 0.999685
Target:  5'- uCAAUAAUGCUUUGUGUUauuaaUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAca---ACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 117119 0.7 1
Target:  5'- aCAAUGAUGCUUUGUAUcaucGAUAAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaaCUAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.