miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28282 5' -39.7 NC_005902.1 + 182341 0.69 1
Target:  5'- uCAACAAU-CUgUGU-UUGUUGAUAGCa -3'
miRNA:   3'- -GUUGUUAcGAaACGuAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 180985 0.73 0.999996
Target:  5'- uCAuCAAUGauaugaaGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUuGUUACgaaa---CGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 180774 0.68 1
Target:  5'- uCAACAAUGCUU--CAUaucaUUGAUGACa -3'
miRNA:   3'- -GUUGUUACGAAacGUAac--AACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 176169 0.66 1
Target:  5'- uCAACAccacaaaGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUuacgaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 175961 0.99 0.384959
Target:  5'- uCAACAAUGCUUUGUggUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGuaACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 175248 0.77 0.999685
Target:  5'- uCAACAAU-CUUUGCAUUaUUGAUGAUg -3'
miRNA:   3'- -GUUGUUAcGAAACGUAAcAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 175041 0.67 1
Target:  5'- uCAAUAAUGCaaag-AUUGUUGAUGAUg -3'
miRNA:   3'- -GUUGUUACGaaacgUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 174894 0.9 0.769336
Target:  5'- uCAAUAAcGCUUUGUGUUGUUGAUAACa -3'
miRNA:   3'- -GUUGUUaCGAAACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 169993 0.9 0.779932
Target:  5'- aUAACAAUGUgaaGCAUUGUUGAUGACa -3'
miRNA:   3'- -GUUGUUACGaaaCGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 169785 0.68 1
Target:  5'- uCAACAAUGCUUcaCAUUGUUauaGAUAu- -3'
miRNA:   3'- -GUUGUUACGAAacGUAACAA---CUAUug -5'
28282 5' -39.7 NC_005902.1 + 157938 0.72 0.999999
Target:  5'- uCGAUGAUGCUUUGUGUcaUUGAUGAUa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 155009 0.7 1
Target:  5'- uCGAUGAUGCUUUGCAUaaucaAUGACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 149986 0.72 1
Target:  5'- uGACAcuaa--UGCAUUGUUGAUGACa -3'
miRNA:   3'- gUUGUuacgaaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 147571 0.74 0.999995
Target:  5'- uCAACAAUGCUUUGUAUUaauccuGUAACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAAcaac--UAUUG- -5'
28282 5' -39.7 NC_005902.1 + 136752 0.72 1
Target:  5'- uGACAAUGCUUaGUGUUGUcaAUGACa -3'
miRNA:   3'- gUUGUUACGAAaCGUAACAacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 134458 0.67 1
Target:  5'- uUAACu---CUUaaaGCAUUGUUGAUAACa -3'
miRNA:   3'- -GUUGuuacGAAa--CGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 134328 0.72 1
Target:  5'- uCAACGAUGCUUUGUAUcaacaAUGACa -3'
miRNA:   3'- -GUUGUUACGAAACGUAacaacUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 131218 0.73 0.999998
Target:  5'- uCAACAA-----UGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUacgaaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 131015 0.73 0.999998
Target:  5'- uCAACAA-----UGCAUUGUUGAUGAUa -3'
miRNA:   3'- -GUUGUUacgaaACGUAACAACUAUUG- -5'
28282 5' -39.7 NC_005902.1 + 125948 0.69 1
Target:  5'- uUAACuucuaag-GCAUUGUUGAUGACa -3'
miRNA:   3'- -GUUGuuacgaaaCGUAACAACUAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.