miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 3' -44.2 NC_005902.1 + 109914 1.12 0.027517
Target:  5'- uAACCCUUUAAGACCUAAGCUAUAUGCa -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGAUAUACG- -5'
28286 3' -44.2 NC_005902.1 + 1143 0.99 0.15934
Target:  5'- gAACCCUUUAAGACCUAAGCUGUAUa- -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 76083 0.98 0.168457
Target:  5'- uAACCCUUUAAGACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 120243 0.97 0.1881
Target:  5'- uAACCCUUUAAcACCUGAGCUAUAUGCu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUACG- -5'
28286 3' -44.2 NC_005902.1 + 117727 0.92 0.334561
Target:  5'- uAACCCUUUAAcAUCUAAGCUAUAUGCa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUACG- -5'
28286 3' -44.2 NC_005902.1 + 58615 0.92 0.342892
Target:  5'- uAACCCUUUAAGACUUAAGCUGUAUa- -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 184859 0.87 0.593155
Target:  5'- uAACCCUUUAAcACCUAAGCUGUAuauaUGCu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU----ACG- -5'
28286 3' -44.2 NC_005902.1 + 50208 0.85 0.660299
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUauaGCu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUA---CG- -5'
28286 3' -44.2 NC_005902.1 + 13180 0.85 0.660299
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAuacccauuUGCg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU--------ACG- -5'
28286 3' -44.2 NC_005902.1 + 158226 0.85 0.671457
Target:  5'- uAACCCUUUAAuGCCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 46932 0.85 0.671457
Target:  5'- uAACCUgUUAAuACCUAAGCUAUAUGCa -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAUAUACG- -5'
28286 3' -44.2 NC_005902.1 + 23254 0.85 0.682577
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAuauucacacuUGCa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU----------ACG- -5'
28286 3' -44.2 NC_005902.1 + 99554 0.85 0.693647
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAuacucauucgcUGCa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU-----------ACG- -5'
28286 3' -44.2 NC_005902.1 + 157226 0.84 0.704655
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 60464 0.84 0.704655
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 91855 0.84 0.704655
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 47233 0.84 0.704655
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 97173 0.84 0.704655
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 169121 0.84 0.704655
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 69180 0.84 0.726439
Target:  5'- uAACCCUUUAAcAUCUAAGCUAUAUGa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.