miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 3' -44.2 NC_005902.1 + 1143 0.99 0.15934
Target:  5'- gAACCCUUUAAGACCUAAGCUGUAUa- -3'
miRNA:   3'- -UUGGGAAAUUCUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 1259 0.68 0.999982
Target:  5'- uAACUCUUcAAcACCUAGGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAaUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 4193 0.67 0.999998
Target:  5'- uAACCUUUUAAuAUUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 5646 0.67 0.999996
Target:  5'- uAACCCUUUAAcaaUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcugGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 6304 0.76 0.979132
Target:  5'- uAACCCUuuaaucuUUAAGACCUAAGCcAUAUa- -3'
miRNA:   3'- -UUGGGA-------AAUUCUGGAUUCGaUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 11405 0.7 0.99981
Target:  5'- cACUCUUUAAcACUUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 12823 0.74 0.993938
Target:  5'- uAACCCUUUAAcuCCUAAGUUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 13180 0.85 0.660299
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAuacccauuUGCg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU--------ACG- -5'
28286 3' -44.2 NC_005902.1 + 15421 0.78 0.952253
Target:  5'- uAACUCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 16512 0.66 0.999999
Target:  5'- uAACCCUgUAAcACCUGAGaUAUAUaGCu -3'
miRNA:   3'- -UUGGGAaAUUcUGGAUUCgAUAUA-CG- -5'
28286 3' -44.2 NC_005902.1 + 16875 0.76 0.981486
Target:  5'- uAUCCUUUAAcACCUAAGCUAUAUcaaguaaGCa -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUA-------CG- -5'
28286 3' -44.2 NC_005902.1 + 18748 0.77 0.960558
Target:  5'- uACCCUUUAAcACCUAAGUUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 18854 0.8 0.886472
Target:  5'- uAACCUUUUAAcACCUAAGCUAUAUacGCu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUA--CG- -5'
28286 3' -44.2 NC_005902.1 + 21167 0.73 0.995601
Target:  5'- -uCCCUUUAAcACUUAAGCUAUauaugaauaGUGCa -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAUA---------UACG- -5'
28286 3' -44.2 NC_005902.1 + 21308 0.71 0.999599
Target:  5'- uACCUUUUAAcAUCUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 23215 0.72 0.998199
Target:  5'- uAACUUUcUAAuAUCUAAGCUAUAUGCa -3'
miRNA:   3'- -UUGGGAaAUUcUGGAUUCGAUAUACG- -5'
28286 3' -44.2 NC_005902.1 + 23254 0.85 0.682577
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAuauucacacuUGCa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU----------ACG- -5'
28286 3' -44.2 NC_005902.1 + 23285 0.78 0.932313
Target:  5'- uAAUCCUUUAAuACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 23463 0.69 0.999889
Target:  5'- uAGCCCUUUAAcACCUAAuCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUcGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 23606 0.73 0.996872
Target:  5'- uACUCUUUAAcACCUAAGCUAUAc-- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.