miRNA display CGI


Results 1 - 20 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28286 3' -44.2 NC_005902.1 + 184859 0.87 0.593155
Target:  5'- uAACCCUUUAAcACCUAAGCUGUAuauaUGCu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU----ACG- -5'
28286 3' -44.2 NC_005902.1 + 180881 0.67 0.999997
Target:  5'- uAACCCUUUAAcAUCUAAGCaAUAUc- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGaUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 180618 0.69 0.999938
Target:  5'- uAAUUCUUUAAcACCUAAGCUuAUAUGa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGA-UAUACg -5'
28286 3' -44.2 NC_005902.1 + 180348 0.67 0.999998
Target:  5'- uAAUUCUUUAAccCCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 179808 0.72 0.998199
Target:  5'- uAACCCUUUAAcaaCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcugGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 179694 0.77 0.967808
Target:  5'- uAUCCUUUAAaACCUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 175936 0.68 0.999975
Target:  5'- uAACCCUUUAAcuCCUAAGgUAUcaucaacaAUGCu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUCgAUA--------UACG- -5'
28286 3' -44.2 NC_005902.1 + 174589 0.67 0.999996
Target:  5'- uGACCgagUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGga-AAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 172814 0.83 0.789064
Target:  5'- uACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 172603 0.78 0.937723
Target:  5'- uAACCCUUUAAcACUUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 170847 0.69 0.999889
Target:  5'- uACCCUUUAAcAUgUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGgAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 170698 0.78 0.942848
Target:  5'- uAACUCUUUAAcACCUAAGCUAUAuaugaauaauUGCa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU----------ACG- -5'
28286 3' -44.2 NC_005902.1 + 169981 0.7 0.999755
Target:  5'- uAACCCUUU---AUCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAuucUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 169509 0.78 0.94769
Target:  5'- uAACUCUUUAAcACCUGAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 169440 0.79 0.914365
Target:  5'- uAACCCUUUAAcACUUAAGCUGUAuauuuguuUGCg -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAU--------ACG- -5'
28286 3' -44.2 NC_005902.1 + 169121 0.84 0.704655
Target:  5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 167155 0.78 0.932313
Target:  5'- -uCCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 166126 0.79 0.926617
Target:  5'- uACCCUUUAAuACUUAAGCUAUAuacaUGCu -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAU----ACG- -5'
28286 3' -44.2 NC_005902.1 + 165944 0.71 0.999599
Target:  5'- cACCUUUUAAuACUUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5'
28286 3' -44.2 NC_005902.1 + 165886 0.83 0.789064
Target:  5'- uACCCUUUAAcACCUAAGCUAUAUa- -3'
miRNA:   3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.