Results 1 - 20 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 3' | -44.2 | NC_005902.1 | + | 109914 | 1.12 | 0.027517 |
Target: 5'- uAACCCUUUAAGACCUAAGCUAUAUGCa -3' miRNA: 3'- -UUGGGAAAUUCUGGAUUCGAUAUACG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 169440 | 0.79 | 0.914365 |
Target: 5'- uAACCCUUUAAcACUUAAGCUGUAuauuuguuUGCg -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAU--------ACG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 48377 | 0.79 | 0.920634 |
Target: 5'- uAACCCUUUAAcACCUAAGUUAUGUa- -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 26257 | 0.66 | 1 |
Target: 5'- uACCCUUUAAuACUU-AGCUAUAUa- -3' miRNA: 3'- uUGGGAAAUUcUGGAuUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 46932 | 0.85 | 0.671457 |
Target: 5'- uAACCUgUUAAuACCUAAGCUAUAUGCa -3' miRNA: 3'- -UUGGGaAAUUcUGGAUUCGAUAUACG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 23254 | 0.85 | 0.682577 |
Target: 5'- uAACCCUUUAAcACCUAAGCUAUAuauucacacuUGCa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAU----------ACG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 47233 | 0.84 | 0.704655 |
Target: 5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 91855 | 0.84 | 0.704655 |
Target: 5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 128771 | 0.83 | 0.789064 |
Target: 5'- uACCCUUUAAcACCUAAGCUAUAUa- -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 136043 | 0.79 | 0.907812 |
Target: 5'- aAACCCUUUAAcuCCUAAGCUAUAUa- -3' miRNA: 3'- -UUGGGAAAUUcuGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 30795 | 0.8 | 0.878814 |
Target: 5'- uAACCCUUUAAcAUCUAAGCUAUAUacGCu -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUA--CG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 40966 | 0.83 | 0.778981 |
Target: 5'- cACCCUUUAAuACCUAAGCUAUAUa- -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 1143 | 0.99 | 0.15934 |
Target: 5'- gAACCCUUUAAGACCUAAGCUGUAUa- -3' miRNA: 3'- -UUGGGAAAUUCUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 97435 | 0.8 | 0.900976 |
Target: 5'- uACCCUUUAAcACCUAAGCUAUAc-- -3' miRNA: 3'- uUGGGAAAUUcUGGAUUCGAUAUacg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 13180 | 0.85 | 0.660299 |
Target: 5'- uAACCCUUUAAcACCUAAGCUAUAuacccauuUGCg -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAU--------ACG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 97173 | 0.84 | 0.704655 |
Target: 5'- uAACCCUUUAAcACCUAAGCUAUAUa- -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 61521 | 0.79 | 0.907812 |
Target: 5'- uAACCCUUUAAuACUUAAGCUAUAUaugaGCa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUA----CG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 34812 | 0.79 | 0.920634 |
Target: 5'- uAACCCUUUAAcACCUAAGUUAUAUa- -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUAcg -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 50208 | 0.85 | 0.660299 |
Target: 5'- uAACCCUUUAAcACCUAAGCUAUAUauaGCu -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAUA---CG- -5' |
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28286 | 3' | -44.2 | NC_005902.1 | + | 99554 | 0.85 | 0.693647 |
Target: 5'- uAACCCUUUAAcACCUAAGCUAUAuacucauucgcUGCa -3' miRNA: 3'- -UUGGGAAAUUcUGGAUUCGAUAU-----------ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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