Results 41 - 60 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 29492 | 0.89 | 0.838078 |
Target: 5'- aAAUAUAUAGCUUAGGUgUUaAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAA-UUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 43020 | 0.87 | 0.903005 |
Target: 5'- uGAGUAUAUAGCUUAGaUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 151225 | 0.87 | 0.903005 |
Target: 5'- uGAGUAUAUAaCUUAGGUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUcGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 40093 | 0.87 | 0.903005 |
Target: 5'- uGAGUAUAUAGCUUAGaUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 6228 | 0.87 | 0.903005 |
Target: 5'- uGAGUAUAUAGCUUAGuUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 87103 | 0.86 | 0.922733 |
Target: 5'- --uUAUAUAGCUUAGGggUUAAAGGGu -3' miRNA: 3'- cuuAUAUAUCGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 71498 | 0.86 | 0.928718 |
Target: 5'- --uUAUAUAGCcUAGGUgUUAAAGGGg -3' miRNA: 3'- cuuAUAUAUCGaAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 1177 | 0.86 | 0.928718 |
Target: 5'- -cAUAUAUacAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUA--UCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 136001 | 0.86 | 0.934406 |
Target: 5'- -----cAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuuauaUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 169167 | 0.86 | 0.934406 |
Target: 5'- ---gAUAUAGCUUAGGUgUUAAAGGa -3' miRNA: 3'- cuuaUAUAUCGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 135929 | 0.85 | 0.944896 |
Target: 5'- aAGUAUGUAGCUUAGGUgUUAggaucaAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAU------UUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 27813 | 0.85 | 0.944896 |
Target: 5'- -uGUAUAUAGCUUAGGcaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 110138 | 0.85 | 0.944896 |
Target: 5'- -uGUAUAUAGCUUAGGUaUUAAAGGa -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 29134 | 0.85 | 0.954221 |
Target: 5'- -uAUAUAUAGUUUAGGUaUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 162753 | 0.85 | 0.954221 |
Target: 5'- -cAUAUAUAGCUUAGGUaUUAAAGGa -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 39614 | 0.84 | 0.966106 |
Target: 5'- uGAAU-UAUAGCUUAGGUgUUAAAGGa -3' miRNA: 3'- -CUUAuAUAUCGAAUCCAgAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 43886 | 0.84 | 0.966106 |
Target: 5'- aAGUAUAUAGCUUAGGUgUUAAAGa- -3' miRNA: 3'- cUUAUAUAUCGAAUCCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 75129 | 0.84 | 0.966106 |
Target: 5'- -cAUAUAUAGCUUAGGUauaAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgaaUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 78118 | 0.83 | 0.975629 |
Target: 5'- aAGUAUAUAGCUUAGaGUUUaUAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAAUC-CAGA-AUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 65794 | 0.83 | 0.980783 |
Target: 5'- uGAGcAUAUAGCUcAGGUgUUAAAGGGu -3' miRNA: 3'- -CUUaUAUAUCGAaUCCAgAAUUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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