miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28290 5' -42 NC_005902.1 + 135921 0.76 0.997836
Target:  5'- aGCAcAGUAaguauguAGCUUAGGUGUUAGGAu- -3'
miRNA:   3'- -CGUaUCGU-------UCGAAUCCACAAUUUUcu -5'
28290 5' -42 NC_005902.1 + 135826 0.8 0.976749
Target:  5'- ---aAGCuauauauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGu------UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 134355 0.74 0.999702
Target:  5'- aGCAcAGCAaaugaguauauAGCUUAaGUGUUAAAAGGg -3'
miRNA:   3'- -CGUaUCGU-----------UCGAAUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 133706 0.72 0.999958
Target:  5'- -uGUAGCGAGUgagUAuGUGUUAAAGGGu -3'
miRNA:   3'- cgUAUCGUUCGa--AUcCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 133259 0.66 1
Target:  5'- ---cAGCAuucacuuuauauaaCUUAGGUGUUAAAAGGu -3'
miRNA:   3'- cguaUCGUuc------------GAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 131989 0.8 0.973941
Target:  5'- uCAUAuauAGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 131698 0.71 0.999984
Target:  5'- aGCAUAuauauAGCUUAGGUGUUAAu--- -3'
miRNA:   3'- -CGUAUcgu--UCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 131170 0.8 0.964052
Target:  5'- ---gAGUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 130979 0.72 0.999943
Target:  5'- ---aAGUGAaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cguaUCGUUcGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 125574 0.75 0.998249
Target:  5'- uUAUAuauAGCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- cGUAUcguUCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 122792 0.78 0.987564
Target:  5'- aCAUAGCGaccgaguauauAGCUUAGGgGUUAAAGGGu -3'
miRNA:   3'- cGUAUCGU-----------UCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 117751 0.73 0.999864
Target:  5'- uGCAaguaAGUAuaGGCUUAGGaGUUAAAAGAu -3'
miRNA:   3'- -CGUa---UCGU--UCGAAUCCaCAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 116971 0.8 0.970894
Target:  5'- aGCAUAuUAAGCUUAGGUGUUAAc--- -3'
miRNA:   3'- -CGUAUcGUUCGAAUCCACAAUUuucu -5'
28290 5' -42 NC_005902.1 + 116816 0.67 1
Target:  5'- ---gAGUAuaCUUAGGUGUUAAAGGu -3'
miRNA:   3'- cguaUCGUucGAAUCCACAAUUUUCu -5'
28290 5' -42 NC_005902.1 + 116661 0.71 0.999992
Target:  5'- aGUAUaauaAGCAuauAGUUUAGGUGUUAAAcGGu -3'
miRNA:   3'- -CGUA----UCGU---UCGAAUCCACAAUUUuCU- -5'
28290 5' -42 NC_005902.1 + 114430 0.86 0.805719
Target:  5'- gGCAagugAGUAuauAGCUUAGGUGUUAAAGGAu -3'
miRNA:   3'- -CGUa---UCGU---UCGAAUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 114277 0.85 0.823032
Target:  5'- aGCAUAGUGAGCaaguauguagugUAGGUGUUAAAAGGu -3'
miRNA:   3'- -CGUAUCGUUCGa-----------AUCCACAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 113820 0.69 1
Target:  5'- uGUAUAuauAGUUUAGGUGUUAAcGGAu -3'
miRNA:   3'- -CGUAUcguUCGAAUCCACAAUUuUCU- -5'
28290 5' -42 NC_005902.1 + 110134 0.67 1
Target:  5'- uGCuu-GUAuauAGCUUAGGUaUUAAAGGAu -3'
miRNA:   3'- -CGuauCGU---UCGAAUCCAcAAUUUUCU- -5'
28290 5' -42 NC_005902.1 + 109943 0.75 0.998564
Target:  5'- aCAUAGCGagugaauauauAGCUUAGGUcUUAAAGGGu -3'
miRNA:   3'- cGUAUCGU-----------UCGAAUCCAcAAUUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.