Results 21 - 40 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28291 | 3' | -44.8 | NC_005902.1 | + | 114810 | 0.67 | 0.999992 |
Target: 5'- uACCCUUUaacACUUAGGUUAUAUAUg--- -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 54348 | 0.67 | 0.999992 |
Target: 5'- ------cACCUAAGCUAUAUauauGCUCAUu -3' miRNA: 3'- ugggaaaUGGAUUCGAUAUA----UGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 3083 | 0.67 | 0.999989 |
Target: 5'- ------cACCUAAGCUAUAUAUaCACu -3' miRNA: 3'- ugggaaaUGGAUUCGAUAUAUGaGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 107135 | 0.67 | 0.999994 |
Target: 5'- aACCUUUUAuccacccUCUAAGCUAUAUAUaaACa -3' miRNA: 3'- -UGGGAAAU-------GGAUUCGAUAUAUGagUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 74604 | 0.67 | 0.999992 |
Target: 5'- uACCCUUUAauauaUAAGCUAUAUAUa--- -3' miRNA: 3'- -UGGGAAAUgg---AUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 175611 | 0.67 | 0.999995 |
Target: 5'- uACCCUUuaaUACgUAAGCcGUAUACaaACa -3' miRNA: 3'- -UGGGAA---AUGgAUUCGaUAUAUGagUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 130953 | 0.67 | 0.999995 |
Target: 5'- aAUCCUUuaaUACUUAAGUUAUAUACa--- -3' miRNA: 3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 69370 | 0.67 | 0.999989 |
Target: 5'- uACCgUUUaacACCUAAaCUAUAUGCUUAUu -3' miRNA: 3'- -UGGgAAA---UGGAUUcGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 135890 | 0.67 | 0.999984 |
Target: 5'- aACUCUUUaacAUUUAAGCUAUGUACaaacaagCACa -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGa------GUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 12541 | 0.67 | 0.999995 |
Target: 5'- aACCCUUuaaUACCUAAaUUAUAUACaaACa -3' miRNA: 3'- -UGGGAA---AUGGAUUcGAUAUAUGagUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 118518 | 0.68 | 0.999959 |
Target: 5'- gAUuuUUUAaucUUUGAGCUAUAUACUCAUu -3' miRNA: 3'- -UGggAAAU---GGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 45213 | 0.68 | 0.999978 |
Target: 5'- uCCCaaUACuuCUAAGUUAUAUACUCGu -3' miRNA: 3'- uGGGaaAUG--GAUUCGAUAUAUGAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 162752 | 0.68 | 0.999978 |
Target: 5'- uCCCUUUaacAUUUAAGCUAUAUGCa--- -3' miRNA: 3'- uGGGAAA---UGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 173179 | 0.68 | 0.999927 |
Target: 5'- cCCCUUaacuCCUAAGUUAUAUACa--- -3' miRNA: 3'- uGGGAAau--GGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 16875 | 0.68 | 0.999978 |
Target: 5'- uAUCCUUUaacACCUAAGCUAUA---UCAa -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUaugAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 16513 | 0.68 | 0.999945 |
Target: 5'- aACCCUguaacACCUGAGaUAUAUAgCUCAg -3' miRNA: 3'- -UGGGAaa---UGGAUUCgAUAUAU-GAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 111399 | 0.68 | 0.999927 |
Target: 5'- cACC----ACCUAAGUUAUAUACUUAa -3' miRNA: 3'- -UGGgaaaUGGAUUCGAUAUAUGAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 151366 | 0.68 | 0.999927 |
Target: 5'- uAUCCUUUAaauCCUaAAGCU-UAUACUCAUu -3' miRNA: 3'- -UGGGAAAU---GGA-UUCGAuAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 159739 | 0.68 | 0.999945 |
Target: 5'- aAUCUUUuaaUACCUAAGCUAUAUAUa--- -3' miRNA: 3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 40668 | 0.68 | 0.999927 |
Target: 5'- aACCCUUUAacgUUUAAGCUAUAUAUaUAUg -3' miRNA: 3'- -UGGGAAAU---GGAUUCGAUAUAUGaGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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