miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 15422 0.72 0.996026
Target:  5'- aACUCUUUaacACCUAAGCUAUAUAUa--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 16463 0.71 0.998675
Target:  5'- uACCUUUUaacACCUAAaCUAUAcACUCGCa -3'
miRNA:   3'- -UGGGAAA---UGGAUUcGAUAUaUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 16513 0.68 0.999945
Target:  5'- aACCCUguaacACCUGAGaUAUAUAgCUCAg -3'
miRNA:   3'- -UGGGAaa---UGGAUUCgAUAUAU-GAGUg -5'
28291 3' -44.8 NC_005902.1 + 16875 0.68 0.999978
Target:  5'- uAUCCUUUaacACCUAAGCUAUA---UCAa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUaugAGUg -5'
28291 3' -44.8 NC_005902.1 + 17638 0.7 0.999722
Target:  5'- aACCCUUUAaacCCUAAgGCU-UAUACUUAUu -3'
miRNA:   3'- -UGGGAAAU---GGAUU-CGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 18748 0.77 0.941832
Target:  5'- uACCCUUUaacACCUAAGUUAUAUACa--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 18855 0.77 0.951274
Target:  5'- aACCUUUUaacACCUAAGCUAUAUACg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 20279 0.75 0.976077
Target:  5'- aAUCCUUUaacACCUAAGUUAacaUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAU---AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 21167 0.69 0.999833
Target:  5'- uCCCUUUaacACUUAAGCUAUAUAUgaauagUGCa -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGa-----GUG- -5'
28291 3' -44.8 NC_005902.1 + 21308 0.79 0.885527
Target:  5'- uACCUUUUaacAUCUAAGCUAUAUACUCu- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 22552 0.66 0.999997
Target:  5'- aAUCCUUUAaauCCUAAGgCUAuacuuguuugcUAUACUUACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUC-GAU-----------AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 22600 0.73 0.995239
Target:  5'- aGCCUUaggauuuaaagggUUaacACCUAAGCUAUAuauuUACUCACg -3'
miRNA:   3'- -UGGGA-------------AA---UGGAUUCGAUAU----AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23255 0.97 0.180769
Target:  5'- aACCCUUUaacACCUAAGCUAUAUAUUCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23286 0.74 0.986982
Target:  5'- aAUCCUUuaaUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 23464 0.82 0.778753
Target:  5'- aGCCCUUUaacACCUAAuCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23606 0.69 0.999903
Target:  5'- uACUCUUUaacACCUAAGCUA--UACaCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUauAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 25011 0.89 0.426945
Target:  5'- aACUCUUUAUCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 25118 0.74 0.991376
Target:  5'- uACCCUUUAacUCUAuGCUAUAUAUaCACa -3'
miRNA:   3'- -UGGGAAAU--GGAUuCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 26257 0.84 0.705068
Target:  5'- uACCCUUUAauaCUuAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAAUg--GAuUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 26884 0.7 0.999645
Target:  5'- uACCUUUuaUGCCUGGuGCUAUGUguaUCACa -3'
miRNA:   3'- -UGGGAA--AUGGAUU-CGAUAUAug-AGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.