miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 27887 0.7 0.999278
Target:  5'- -----aUGCCUAAGCUAuauaugcauuuguUAUACUCACu -3'
miRNA:   3'- ugggaaAUGGAUUCGAU-------------AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 28841 0.75 0.985187
Target:  5'- -----aUACCUAAGCUAUAUAUUUACu -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 28927 0.78 0.931278
Target:  5'- uACCCUUUAaauCCUAAGCU-UAUACUUAUu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 29088 0.85 0.650016
Target:  5'- aAUCCUUuaaUAUUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 29211 0.74 0.986982
Target:  5'- aACUCUUUaacACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 29608 0.85 0.627801
Target:  5'- uACCCUUUaacAUUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 30796 0.77 0.946691
Target:  5'- aACCCUUUaacAUCUAAGCUAUAUACg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 31415 0.86 0.594532
Target:  5'- uACCCUUuaaUACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 32983 0.67 0.999995
Target:  5'- ------cACCUAAaCUAUAUACUCACu -3'
miRNA:   3'- ugggaaaUGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 34813 0.91 0.345742
Target:  5'- aACCCUUUaacACCUAAGUUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 36160 0.75 0.978664
Target:  5'- aACCCUUUuaacAUCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- -UGGGAAA----UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 36968 0.86 0.605601
Target:  5'- --aCUUUACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- uggGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 37197 0.77 0.959238
Target:  5'- gACCUUUuaauacaUAUUUAAGCUAUAUAUUCACu -3'
miRNA:   3'- -UGGGAA-------AUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 37767 0.68 0.99997
Target:  5'- uAUCUUUUaacACCUAAGCUugcUAUGCUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAu--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 38417 0.66 0.999996
Target:  5'- ------cAUCUAAGCUAUAcACUCACu -3'
miRNA:   3'- ugggaaaUGGAUUCGAUAUaUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 39095 0.79 0.913338
Target:  5'- aACUCUUUaacACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 39416 0.66 0.999996
Target:  5'- -----aUACCUAAGCUAUAUACg--- -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 40064 0.73 0.993585
Target:  5'- aACCCUUUaacACUUAAGCUAUAUAUg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 40668 0.68 0.999927
Target:  5'- aACCCUUUAacgUUUAAGCUAUAUAUaUAUg -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 40966 0.94 0.262379
Target:  5'- cACCCUUuaaUACCUAAGCUAUAUacACUCACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUA--UGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.