Results 41 - 60 of 300 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28291 | 3' | -44.8 | NC_005902.1 | + | 98636 | 0.84 | 0.705068 |
Target: 5'- cCCCUUcaUACCUAAGCUAUAUACaagugagCACa -3' miRNA: 3'- uGGGAA--AUGGAUUCGAUAUAUGa------GUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 167155 | 0.87 | 0.550664 |
Target: 5'- uCCCUUUaacACCUAAGCUAUAUACUUAa -3' miRNA: 3'- uGGGAAA---UGGAUUCGAUAUAUGAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 136044 | 0.99 | 0.140953 |
Target: 5'- aACCCUUUAacuCCUAAGCUAUAUACUCACu -3' miRNA: 3'- -UGGGAAAU---GGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 95762 | 0.84 | 0.705068 |
Target: 5'- uACCUUUUaacACUUAAGCUAUAUAUUCACu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 104092 | 1 | 0.122463 |
Target: 5'- aACCCUUUACUUAAGCUAUAUACUUACu -3' miRNA: 3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 180826 | 0.79 | 0.899979 |
Target: 5'- uACCUaacACCUAAGCgAUAUACUCACu -3' miRNA: 3'- -UGGGaaaUGGAUUCGaUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 99555 | 0.97 | 0.185762 |
Target: 5'- aACCCUUUaacACCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 92158 | 0.79 | 0.885527 |
Target: 5'- aAUCUUUUAacaaCUAAGCUAUAUACUUACu -3' miRNA: 3'- -UGGGAAAUg---GAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 149207 | 0.8 | 0.853505 |
Target: 5'- -----aUACCUAAGCUAUAUACUCAUu -3' miRNA: 3'- ugggaaAUGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 166126 | 0.81 | 0.817715 |
Target: 5'- uACCCUUuaaUACUUAAGCUAUAUacauGCUCAUu -3' miRNA: 3'- -UGGGAA---AUGGAUUCGAUAUA----UGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 50209 | 0.81 | 0.808246 |
Target: 5'- aACCCUUUaacACCUAAGCUAUAUauaGCUUAg -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUA---UGAGUg -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 172604 | 0.82 | 0.768597 |
Target: 5'- aACCCUUUaacACUUAAGCUAUAUACUUg- -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 97435 | 0.83 | 0.737318 |
Target: 5'- uACCCUUUaacACCUAAGCUAUAcuUACUUAUu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAU--AUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 162596 | 0.85 | 0.661103 |
Target: 5'- -----aUACCUAAGCUAUAUACUCACu -3' miRNA: 3'- ugggaaAUGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 47184 | 0.85 | 0.627801 |
Target: 5'- -aCCUUUaacACUUAAGCUAUAUACUCACc -3' miRNA: 3'- ugGGAAA---UGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 36968 | 0.86 | 0.605601 |
Target: 5'- --aCUUUACCUAAGCUAUAUACUUAUu -3' miRNA: 3'- uggGAAAUGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 136567 | 0.87 | 0.561553 |
Target: 5'- aACCCUUUaacACCUAAGUUAUAUACUUAUu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 162389 | 0.88 | 0.497347 |
Target: 5'- uCCCUUUaacACCUAAGCUAcAUACUCACu -3' miRNA: 3'- uGGGAAA---UGGAUUCGAUaUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 95943 | 0.89 | 0.426945 |
Target: 5'- uACCCUUUaacACUUAAGUUAUAUACUCACu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5' |
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28291 | 3' | -44.8 | NC_005902.1 | + | 143017 | 0.91 | 0.362799 |
Target: 5'- aACCCUUUaacAUCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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