miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 157227 0.85 0.616694
Target:  5'- aACCCUUUaacACCUAAGCUAUAUACaaaagagCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 109915 0.85 0.627801
Target:  5'- aACCCUUUaagACCUAAGCUAUAUGCaaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 47184 0.85 0.627801
Target:  5'- -aCCUUUaacACUUAAGCUAUAUACUCACc -3'
miRNA:   3'- ugGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 142153 0.85 0.627801
Target:  5'- cACUCUUUaacACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 1144 0.85 0.627801
Target:  5'- aACCCUUUaagACCUAAGCUGUAUACaaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 29608 0.85 0.627801
Target:  5'- uACCCUUUaacAUUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 29088 0.85 0.650016
Target:  5'- aAUCCUUuaaUAUUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 54885 0.85 0.650016
Target:  5'- aACCCUUaaUACCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAA--AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 149837 0.85 0.650016
Target:  5'- uAUCCUUUACCUaAAGCU-UAUACUCACu -3'
miRNA:   3'- -UGGGAAAUGGA-UUCGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 162596 0.85 0.661103
Target:  5'- -----aUACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 158227 0.85 0.661103
Target:  5'- aACCCUUuaaUGCCUAAGCUAUAUACaaaugaUCAUa -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUG------AGUG- -5'
28291 3' -44.8 NC_005902.1 + 54869 0.84 0.694157
Target:  5'- aACCCUUUaacACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAuAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 172814 0.84 0.694157
Target:  5'- uACCCUUUaacACCUAAGCUAUAUAUgaguaagcaUCGCa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUG---------AGUG- -5'
28291 3' -44.8 NC_005902.1 + 107918 0.84 0.694157
Target:  5'- uACCCUUUAuaaacUCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGAAAU-----GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 26257 0.84 0.705068
Target:  5'- uACCCUUUAauaCUuAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAAUg--GAuUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 95762 0.84 0.705068
Target:  5'- uACCUUUUaacACUUAAGCUAUAUAUUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 117931 0.84 0.705068
Target:  5'- uACCCUcuaccACCUAAGUUAUAUGCUUACu -3'
miRNA:   3'- -UGGGAaa---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 98636 0.84 0.705068
Target:  5'- cCCCUUcaUACCUAAGCUAUAUACaagugagCACa -3'
miRNA:   3'- uGGGAA--AUGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 50103 0.83 0.715906
Target:  5'- aACCCUUUgauccuaacACCUAAGCUAcAUACUUACu -3'
miRNA:   3'- -UGGGAAA---------UGGAUUCGAUaUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 104716 0.83 0.715906
Target:  5'- uAUCCUUUAacuUUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.