miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 169122 0.83 0.72666
Target:  5'- aACCCUUUaacACCUAAGCUAUAUAUUUg- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 97435 0.83 0.737318
Target:  5'- uACCCUUUaacACCUAAGCUAUAcuUACUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAU--AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 49951 0.83 0.737318
Target:  5'- uACCCUUUAacuCCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 91856 0.83 0.737318
Target:  5'- aACCCUUUaacACCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 127771 0.83 0.747868
Target:  5'- -aUCUUUACCUuuuaacacugAAGCUAUAUACUCACu -3'
miRNA:   3'- ugGGAAAUGGA----------UUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 78856 0.83 0.747868
Target:  5'- aACCUUUUAaccCUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 165886 0.83 0.747868
Target:  5'- uACCCUUUaacACCUAAGCUAUAUACg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 162721 0.83 0.747868
Target:  5'- uACCUUaUACCUAAGCUAcAUAUUCACu -3'
miRNA:   3'- -UGGGAaAUGGAUUCGAUaUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 44013 0.83 0.758298
Target:  5'- uACCUUUUaacACCUAAGCUAUAUACaCGCa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 172604 0.82 0.768597
Target:  5'- aACCCUUUaacACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 146425 0.82 0.768597
Target:  5'- aAUCCUUUaacACCUAAGCUAUAauucacuaUGCUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAU--------AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23464 0.82 0.778753
Target:  5'- aGCCCUUUaacACCUAAuCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 179694 0.82 0.778753
Target:  5'- uAUCCUUUaaaACCUAAGCUAuaUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAU--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 60465 0.82 0.788754
Target:  5'- aACCCUUUaacACCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 93987 0.82 0.788754
Target:  5'- uACUUUUUaaacAUCUAAGCUAUGUACUCACu -3'
miRNA:   3'- -UGGGAAA----UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 41980 0.82 0.788754
Target:  5'- aAUUgUUUaacACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGgAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 102264 0.82 0.798588
Target:  5'- aACCCUUUaacACUUAAGUgAUAUACUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 91118 0.81 0.808246
Target:  5'- uACCCUUUGUCUAAGCUAUAUAggCGCu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUgaGUG- -5'
28291 3' -44.8 NC_005902.1 + 156786 0.81 0.808246
Target:  5'- aAUCCUaacACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGAaa-UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 50209 0.81 0.808246
Target:  5'- aACCCUUUaacACCUAAGCUAUAUauaGCUUAg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUA---UGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.