miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 113601 0.7 0.999722
Target:  5'- uAUCCUUuaaUAUCUAAGC-AUAUACUUAUu -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 157842 0.7 0.999645
Target:  5'- -aCUUUUcaauauuuaacACCUAAGCUAUAUAUUUGCu -3'
miRNA:   3'- ugGGAAA-----------UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 76654 0.7 0.999645
Target:  5'- uACCCUUUaacAUCUAAGUUugcUAUGCUUAUa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAu--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 26884 0.7 0.999645
Target:  5'- uACCUUUuaUGCCUGGuGCUAUGUguaUCACa -3'
miRNA:   3'- -UGGGAA--AUGGAUU-CGAUAUAug-AGUG- -5'
28291 3' -44.8 NC_005902.1 + 67928 0.7 0.999645
Target:  5'- uACCCUUUGaccCCUAA-CUAUAUACaCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUcGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 144983 0.7 0.99955
Target:  5'- aAUCCUUUAauaCUaAAGCUAUAUACaugaUCACu -3'
miRNA:   3'- -UGGGAAAUg--GA-UUCGAUAUAUG----AGUG- -5'
28291 3' -44.8 NC_005902.1 + 48221 0.7 0.99955
Target:  5'- cAUCCUUUAacuCUUAAGCUAcauauuUGCUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUau----AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 157172 0.7 0.99955
Target:  5'- uGCCCUaggaauuaaUACCUAAGUUAUAUACa--- -3'
miRNA:   3'- -UGGGAa--------AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 94701 0.7 0.999434
Target:  5'- -aUCUUaaUACCUAAGCUAUGUACa--- -3'
miRNA:   3'- ugGGAA--AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 181811 0.7 0.999293
Target:  5'- uUgCUUUACUUAAGCUAUAUAaUUACu -3'
miRNA:   3'- uGgGAAAUGGAUUCGAUAUAUgAGUG- -5'
28291 3' -44.8 NC_005902.1 + 174591 0.7 0.999293
Target:  5'- -aCCgagUUaacACCUAAGCUAUAUACgaaugagCACa -3'
miRNA:   3'- ugGGa--AA---UGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 127377 0.7 0.999293
Target:  5'- aAUCCUUuaagacUACUUGuuCUAUAUACUCACu -3'
miRNA:   3'- -UGGGAA------AUGGAUucGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 170531 0.7 0.999293
Target:  5'- aACCUUUUaacACCUAAaCUAUAUauacACUCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUcGAUAUA----UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 27887 0.7 0.999278
Target:  5'- -----aUGCCUAAGCUAuauaugcauuuguUAUACUCACu -3'
miRNA:   3'- ugggaaAUGGAUUCGAU-------------AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 167248 0.71 0.999123
Target:  5'- uACUUUUUaacACCUAAGUUAUAUAUUCGu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 116630 0.71 0.999123
Target:  5'- aACUUUUUaacACCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 122640 0.71 0.999123
Target:  5'- uACCuCUUUaacAUCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -UGG-GAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 154913 0.71 0.999123
Target:  5'- cAUCUUUUAacauCC-AAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAU----GGaUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 147589 0.71 0.998919
Target:  5'- aAUCCUguaacACCUAAGCUAUAUAUaaaugagCGCa -3'
miRNA:   3'- -UGGGAaa---UGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 170847 0.71 0.998919
Target:  5'- uACCCUUUaacAUgUAAGCUAUAUACaaACu -3'
miRNA:   3'- -UGGGAAA---UGgAUUCGAUAUAUGagUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.