miRNA display CGI


Results 61 - 80 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 97435 0.83 0.737318
Target:  5'- uACCCUUUaacACCUAAGCUAUAcuUACUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAU--AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23464 0.82 0.778753
Target:  5'- aGCCCUUUaacACCUAAuCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 40966 0.94 0.262379
Target:  5'- cACCCUUuaaUACCUAAGCUAUAUacACUCACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUA--UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 145944 0.91 0.362799
Target:  5'- aACCCUUUaacAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 47234 0.89 0.466486
Target:  5'- aACCCUUUaacACCUAAGCUAUAUACaCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 50042 0.87 0.518421
Target:  5'- uACCCUUUaacACCUAAGCUAUGUucauuugcuauGCUCACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUA-----------UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 13181 0.86 0.594532
Target:  5'- aACCCUUUaacACCUAAGCUAUAUACcCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 101127 0.85 0.616694
Target:  5'- aACCCUUuaaaUAUUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAA----AUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 109915 0.85 0.627801
Target:  5'- aACCCUUUaagACCUAAGCUAUAUGCaaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 54869 0.84 0.694157
Target:  5'- aACCCUUUaacACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAuAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 37197 0.77 0.959238
Target:  5'- gACCUUUuaauacaUAUUUAAGCUAUAUAUUCACu -3'
miRNA:   3'- -UGGGAA-------AUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 46933 0.77 0.951274
Target:  5'- aACCUguuaaUACCUAAGCUAUAUGCaaGCa -3'
miRNA:   3'- -UGGGaa---AUGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 156786 0.81 0.808246
Target:  5'- aAUCCUaacACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGAaa-UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 169510 0.81 0.836047
Target:  5'- aACUCUUUaacACCUGAGCUAUAUAuCUCAg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAU-GAGUg -5'
28291 3' -44.8 NC_005902.1 + 92158 0.79 0.885527
Target:  5'- aAUCUUUUAacaaCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 180826 0.79 0.899979
Target:  5'- uACCUaacACCUAAGCgAUAUACUCACu -3'
miRNA:   3'- -UGGGaaaUGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 39095 0.79 0.913338
Target:  5'- aACUCUUUaacACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 61522 0.78 0.92558
Target:  5'- aACCCUUuaaUACUUAAGCUAUAUAUgagCAUc -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGa--GUG- -5'
28291 3' -44.8 NC_005902.1 + 181226 0.78 0.936696
Target:  5'- aGCCUUUaacuCCUAAGUUAUAUACUUGCu -3'
miRNA:   3'- -UGGGAAau--GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 30796 0.77 0.946691
Target:  5'- aACCCUUUaacAUCUAAGCUAUAUACg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.