miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 173179 0.68 0.999927
Target:  5'- cCCCUUaacuCCUAAGUUAUAUACa--- -3'
miRNA:   3'- uGGGAAau--GGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 40668 0.68 0.999927
Target:  5'- aACCCUUUAacgUUUAAGCUAUAUAUaUAUg -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 111399 0.68 0.999927
Target:  5'- cACC----ACCUAAGUUAUAUACUUAa -3'
miRNA:   3'- -UGGgaaaUGGAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 151366 0.68 0.999927
Target:  5'- uAUCCUUUAaauCCUaAAGCU-UAUACUCAUu -3'
miRNA:   3'- -UGGGAAAU---GGA-UUCGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23606 0.69 0.999903
Target:  5'- uACUCUUUaacACCUAAGCUA--UACaCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUauAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 174981 0.69 0.9999
Target:  5'- uGCCUUaggaguuaaauagUUAauaCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGA-------------AAUg--GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 42241 0.69 0.999872
Target:  5'- cACUCUUUAaauCUUAAGUUugcUAUGCUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAu--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 180349 0.69 0.999872
Target:  5'- aAUUCUUUAaccCCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 108899 0.69 0.999872
Target:  5'- aACCUUUUAacagCUAGGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 84931 0.69 0.999833
Target:  5'- cACCCUUUaacACUUAAGCaAUAUACaaACg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGaUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 46326 0.69 0.999833
Target:  5'- -----gUACCcAAGCUAUAUAUUCACu -3'
miRNA:   3'- ugggaaAUGGaUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 124388 0.69 0.999833
Target:  5'- aACUCUUUaacAUCUAAGCUA--UACUCAa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUauAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 77099 0.69 0.999833
Target:  5'- uGCUaac-ACUUAAGCuUAUAUACUCACu -3'
miRNA:   3'- -UGGgaaaUGGAUUCG-AUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 49109 0.69 0.999833
Target:  5'- -aCUUUaaUACCUAcaCUAUAUACUCACu -3'
miRNA:   3'- ugGGAA--AUGGAUucGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 6305 0.69 0.999833
Target:  5'- aACCCUUUaaucuuuaagACCUAAGCcAUAUACa--- -3'
miRNA:   3'- -UGGGAAA----------UGGAUUCGaUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 21167 0.69 0.999833
Target:  5'- uCCCUUUaacACUUAAGCUAUAUAUgaauagUGCa -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGa-----GUG- -5'
28291 3' -44.8 NC_005902.1 + 137772 0.69 0.999833
Target:  5'- aACUUUUUaacACCUAAGCUAUAUAUaCAa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGaGUg -5'
28291 3' -44.8 NC_005902.1 + 92301 0.69 0.999783
Target:  5'- aACCCUUUAUCUAAGau---UACUaCACu -3'
miRNA:   3'- -UGGGAAAUGGAUUCgauauAUGA-GUG- -5'
28291 3' -44.8 NC_005902.1 + 130881 0.69 0.999783
Target:  5'- uACCCUUUAacUCUcAAGCUAUAUACaCAa -3'
miRNA:   3'- -UGGGAAAU--GGA-UUCGAUAUAUGaGUg -5'
28291 3' -44.8 NC_005902.1 + 113601 0.7 0.999722
Target:  5'- uAUCCUUuaaUAUCUAAGC-AUAUACUUAUu -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGaUAUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.