miRNA display CGI


Results 41 - 60 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 5112 0.66 0.999997
Target:  5'- cACUCUUUaacAUCUAAGCaAUAUAUUUGCu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 42524 0.66 0.999997
Target:  5'- uACCCUUUAaauCCUAAcguuuGCUAc--ACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUU-----CGAUauaUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 120372 0.66 0.999998
Target:  5'- cCCCUUUAaauCCUAAgGCU-UAUACUUAUu -3'
miRNA:   3'- uGGGAAAU---GGAUU-CGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 104900 0.66 0.999999
Target:  5'- uAUCCUUUAaauCCUAagGGUUGUAuucuuucacuaUACUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAU--UCGAUAU-----------AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 133560 0.66 0.999999
Target:  5'- aACCCUUUAaauCCUAGgGCU-UAUAUUCGu -3'
miRNA:   3'- -UGGGAAAU---GGAUU-CGAuAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 135890 0.67 0.999984
Target:  5'- aACUCUUUaacAUUUAAGCUAUGUACaaacaagCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 162752 0.68 0.999978
Target:  5'- uCCCUUUaacAUUUAAGCUAUAUGCa--- -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 124388 0.69 0.999833
Target:  5'- aACUCUUUaacAUCUAAGCUA--UACUCAa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUauAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 46326 0.69 0.999833
Target:  5'- -----gUACCcAAGCUAUAUAUUCACu -3'
miRNA:   3'- ugggaaAUGGaUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 42241 0.69 0.999872
Target:  5'- cACUCUUUAaauCUUAAGUUugcUAUGCUCACu -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAu--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 180349 0.69 0.999872
Target:  5'- aAUUCUUUAaccCCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 174981 0.69 0.9999
Target:  5'- uGCCUUaggaguuaaauagUUAauaCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGA-------------AAUg--GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 23606 0.69 0.999903
Target:  5'- uACUCUUUaacACCUAAGCUA--UACaCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUauAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 111399 0.68 0.999927
Target:  5'- cACC----ACCUAAGUUAUAUACUUAa -3'
miRNA:   3'- -UGGgaaaUGGAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 151366 0.68 0.999927
Target:  5'- uAUCCUUUAaauCCUaAAGCU-UAUACUCAUu -3'
miRNA:   3'- -UGGGAAAU---GGA-UUCGAuAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 16513 0.68 0.999945
Target:  5'- aACCCUguaacACCUGAGaUAUAUAgCUCAg -3'
miRNA:   3'- -UGGGAaa---UGGAUUCgAUAUAU-GAGUg -5'
28291 3' -44.8 NC_005902.1 + 159739 0.68 0.999945
Target:  5'- aAUCUUUuaaUACCUAAGCUAUAUAUa--- -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 118518 0.68 0.999959
Target:  5'- gAUuuUUUAaucUUUGAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGggAAAU---GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 133833 0.68 0.999959
Target:  5'- cACCCUUUaacACCUAAGUgaUAUAccuguuUGCUUAUg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCG--AUAU------AUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 37767 0.68 0.99997
Target:  5'- uAUCUUUUaacACCUAAGCUugcUAUGCUUAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAu--AUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.