miRNA display CGI


Results 21 - 40 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 170847 0.71 0.998919
Target:  5'- uACCCUUUaacAUgUAAGCUAUAUACaaACu -3'
miRNA:   3'- -UGGGAAA---UGgAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 170699 0.72 0.996026
Target:  5'- aACUCUUUaacACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 170531 0.7 0.999293
Target:  5'- aACCUUUUaacACCUAAaCUAUAUauacACUCACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUcGAUAUA----UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 169982 0.96 0.206968
Target:  5'- aACCCUUUAUCUAAGCUAUAUAUUCAUu -3'
miRNA:   3'- -UGGGAAAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 169510 0.81 0.836047
Target:  5'- aACUCUUUaacACCUGAGCUAUAUAuCUCAg -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAU-GAGUg -5'
28291 3' -44.8 NC_005902.1 + 169441 0.77 0.946691
Target:  5'- aACCCUUUaacACUUAAGCUGUAUAUUUg- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 169122 0.83 0.72666
Target:  5'- aACCCUUUaacACCUAAGCUAUAUAUUUg- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 167248 0.71 0.999123
Target:  5'- uACUUUUUaacACCUAAGUUAUAUAUUCGu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 167155 0.87 0.550664
Target:  5'- uCCCUUUaacACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGAGUg -5'
28291 3' -44.8 NC_005902.1 + 166126 0.81 0.817715
Target:  5'- uACCCUUuaaUACUUAAGCUAUAUacauGCUCAUu -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUA----UGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 165944 0.76 0.973267
Target:  5'- cACCUUUuaaUACUUAAGCUAUAUAUaCACu -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 165886 0.83 0.747868
Target:  5'- uACCCUUUaacACCUAAGCUAUAUACg--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 163446 0.66 0.999999
Target:  5'- aACCCUUUAaauCCUAAgGCUAUAUAa---- -3'
miRNA:   3'- -UGGGAAAU---GGAUU-CGAUAUAUgagug -5'
28291 3' -44.8 NC_005902.1 + 163385 0.72 0.996026
Target:  5'- aACCCUUUuaacAUCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -UGGGAAA----UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 162752 0.68 0.999978
Target:  5'- uCCCUUUaacAUUUAAGCUAUAUGCa--- -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 162721 0.83 0.747868
Target:  5'- uACCUUaUACCUAAGCUAcAUAUUCACu -3'
miRNA:   3'- -UGGGAaAUGGAUUCGAUaUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 162596 0.85 0.661103
Target:  5'- -----aUACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 162533 0.77 0.951274
Target:  5'- aACCCUUUaacACUUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 162389 0.88 0.497347
Target:  5'- uCCCUUUaacACCUAAGCUAcAUACUCACu -3'
miRNA:   3'- uGGGAAA---UGGAUUCGAUaUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 160886 0.78 0.919599
Target:  5'- aACCC-----CUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGGGaaaugGAUUCGAUAUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.