miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 184860 0.81 0.836047
Target:  5'- aACCCUUUaacACCUAAGCUGUAUAUaUGCu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 184748 0.78 0.931278
Target:  5'- aAUCCUaacACCUGAGCUAuaUAUACUCAUu -3'
miRNA:   3'- -UGGGAaa-UGGAUUCGAU--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 184588 0.81 0.84489
Target:  5'- uAUgCUUUaacACUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -UGgGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 182559 0.66 0.999999
Target:  5'- cACUCgauuuuaacACCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGaaa------UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 181811 0.7 0.999293
Target:  5'- uUgCUUUACUUAAGCUAUAUAaUUACu -3'
miRNA:   3'- uGgGAAAUGGAUUCGAUAUAUgAGUG- -5'
28291 3' -44.8 NC_005902.1 + 181226 0.78 0.936696
Target:  5'- aGCCUUUaacuCCUAAGUUAUAUACUUGCu -3'
miRNA:   3'- -UGGGAAau--GGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 180826 0.79 0.899979
Target:  5'- uACCUaacACCUAAGCgAUAUACUCACu -3'
miRNA:   3'- -UGGGaaaUGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 180349 0.69 0.999872
Target:  5'- aAUUCUUUAaccCCUAAGCUAUAUACa--- -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 179809 0.92 0.329267
Target:  5'- aACCCUUUAacaaCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 179694 0.82 0.778753
Target:  5'- uAUCCUUUaaaACCUAAGCUAuaUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAU--AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 178367 0.76 0.970225
Target:  5'- uACUCU--ACCUAAGCUAUAUACaaGCa -3'
miRNA:   3'- -UGGGAaaUGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 177832 0.77 0.955586
Target:  5'- --aCUUUGCCUAAGCUAUAUACa--- -3'
miRNA:   3'- uggGAAAUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 175611 0.67 0.999995
Target:  5'- uACCCUUuaaUACgUAAGCcGUAUACaaACa -3'
miRNA:   3'- -UGGGAA---AUGgAUUCGaUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 174981 0.69 0.9999
Target:  5'- uGCCUUaggaguuaaauagUUAauaCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- -UGGGA-------------AAUg--GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 174591 0.7 0.999293
Target:  5'- -aCCgagUUaacACCUAAGCUAUAUACgaaugagCACa -3'
miRNA:   3'- ugGGa--AA---UGGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 174462 0.79 0.913338
Target:  5'- aAUCUUUUuacAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 173894 0.74 0.986982
Target:  5'- -----aUACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- ugggaaAUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 173179 0.68 0.999927
Target:  5'- cCCCUUaacuCCUAAGUUAUAUACa--- -3'
miRNA:   3'- uGGGAAau--GGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 172814 0.84 0.694157
Target:  5'- uACCCUUUaacACCUAAGCUAUAUAUgaguaagcaUCGCa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUG---------AGUG- -5'
28291 3' -44.8 NC_005902.1 + 172604 0.82 0.768597
Target:  5'- aACCCUUUaacACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.