miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28291 3' -44.8 NC_005902.1 + 1144 0.85 0.627801
Target:  5'- aACCCUUUaagACCUAAGCUGUAUACaaACa -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 1260 0.68 0.99997
Target:  5'- aACUCUUcaacACCUAGGCUAUAUAUa--- -3'
miRNA:   3'- -UGGGAAa---UGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 1407 0.73 0.994505
Target:  5'- cACCUUUUuaaccCCUAAGCUAUAUACgaaugagCAUa -3'
miRNA:   3'- -UGGGAAAu----GGAUUCGAUAUAUGa------GUG- -5'
28291 3' -44.8 NC_005902.1 + 3029 0.71 0.998386
Target:  5'- ------cAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- ugggaaaUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 3083 0.67 0.999989
Target:  5'- ------cACCUAAGCUAUAUAUaCACu -3'
miRNA:   3'- ugggaaaUGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 3434 0.68 0.99994
Target:  5'- aACCCUUUAaaaaCUAAGCcuuauauuuguuuguUAUGCUCAUu -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGau-------------AUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 4609 0.74 0.986982
Target:  5'- uAUCCUUUaacAUCUAAGCgAUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 5112 0.66 0.999997
Target:  5'- cACUCUUUaacAUCUAAGCaAUAUAUUUGCu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGaUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 5647 0.87 0.539841
Target:  5'- aACCCUUUAacaaUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAAUg---GAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 6305 0.69 0.999833
Target:  5'- aACCCUUUaaucuuuaagACCUAAGCcAUAUACa--- -3'
miRNA:   3'- -UGGGAAA----------UGGAUUCGaUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 7599 0.77 0.941832
Target:  5'- cACCCUUUaacACCUAAaUUAUAUACUCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 8171 0.66 0.999996
Target:  5'- aAUCCUaacAUUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -UGGGAaa-UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 10386 0.78 0.936696
Target:  5'- cCCCUUuaaUACUUAAaCUAUAUACUCACu -3'
miRNA:   3'- uGGGAA---AUGGAUUcGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 11405 0.76 0.973267
Target:  5'- cACUCUUUaacACUUAAGCUAUAUACUUg- -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGAGug -5'
28291 3' -44.8 NC_005902.1 + 11492 0.79 0.906797
Target:  5'- uACUUUUuaaUAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAA---AUGGAUUCGAUAUAUGAGUG- -5'
28291 3' -44.8 NC_005902.1 + 12541 0.67 0.999995
Target:  5'- aACCCUUuaaUACCUAAaUUAUAUACaaACa -3'
miRNA:   3'- -UGGGAA---AUGGAUUcGAUAUAUGagUG- -5'
28291 3' -44.8 NC_005902.1 + 12824 0.73 0.995316
Target:  5'- aACCCUUUAacuCCUAAGUUAUAUAUaUAUa -3'
miRNA:   3'- -UGGGAAAU---GGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 13181 0.86 0.594532
Target:  5'- aACCCUUUaacACCUAAGCUAUAUACcCAUu -3'
miRNA:   3'- -UGGGAAA---UGGAUUCGAUAUAUGaGUG- -5'
28291 3' -44.8 NC_005902.1 + 13397 0.72 0.998046
Target:  5'- aACCUaaUACCUAAGCUAUAUAUg--- -3'
miRNA:   3'- -UGGGaaAUGGAUUCGAUAUAUGagug -5'
28291 3' -44.8 NC_005902.1 + 15148 0.77 0.946691
Target:  5'- aACCUUUUaacAUgUAAGCUAUAUACUUACu -3'
miRNA:   3'- -UGGGAAA---UGgAUUCGAUAUAUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.