miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 156822 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 99649 0.68 0.999998
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 114438 0.71 0.999796
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 165977 0.7 0.999963
Target:  5'- uUUGUaUAUGGCUUauGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 48613 0.69 0.999986
Target:  5'- ----aUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 1185 0.66 1
Target:  5'- -------cAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaguaUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131153 0.66 1
Target:  5'- uUUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 104118 0.66 1
Target:  5'- ---cUCAUGGCUUaGaUGUUAAAGGGu -3'
miRNA:   3'- aacaAGUAUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 136086 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGaGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 67748 0.68 0.999997
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 52365 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 65799 0.68 0.999997
Target:  5'- ----aUAUAGCUcaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAacCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 48283 0.69 0.99999
Target:  5'- uUUGUUUauauAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG----UAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 154623 0.66 1
Target:  5'- uUUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131171 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 86485 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 13436 0.68 0.999999
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 156585 0.77 0.981009
Target:  5'- cUUGUUUAUAuauaaUUUGGGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAGUAUc----GAACCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 78894 0.69 0.99999
Target:  5'- cUUGUUUauauAUAGCUUagaGGGUGgaUAAAAGGu -3'
miRNA:   3'- -AACAAG----UAUCGAA---CCCACa-AUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 100130 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.