miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 154623 0.66 1
Target:  5'- uUUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 8456 0.67 1
Target:  5'- -----aAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaagUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 49144 0.69 0.999993
Target:  5'- cUUGUUUAUAuauaaCUUGGGUGUUAAAu-- -3'
miRNA:   3'- -AACAAGUAUc----GAACCCACAAUUUucc -5'
28292 5' -43.3 NC_005902.1 + 23505 0.71 0.99991
Target:  5'- gUUGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 149241 0.71 0.999881
Target:  5'- cUGUgUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 3476 0.69 0.999995
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 136086 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGaGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAcCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 58263 0.68 0.999997
Target:  5'- -aGUaUAUAGCUUcaGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162430 0.69 0.999993
Target:  5'- uUUGUgugUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAa--GUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 86050 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 104118 0.66 1
Target:  5'- ---cUCAUGGCUUaGaUGUUAAAGGGu -3'
miRNA:   3'- aacaAGUAUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 162687 0.66 1
Target:  5'- gUGgugUCAUcGCUUaaaGGG-GUUAAAGGGu -3'
miRNA:   3'- aACa--AGUAuCGAA---CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 37286 0.67 1
Target:  5'- -cGUUCAuaUAGCUUaaGUGUUAAAGGa -3'
miRNA:   3'- aaCAAGU--AUCGAAccCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 99649 0.68 0.999998
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 69408 0.69 0.999993
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAAa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 71686 0.69 0.999993
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAGAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 172858 0.77 0.985202
Target:  5'- -gGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131985 0.77 0.981009
Target:  5'- cUGUUCAuauaUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aACAAGU----AUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 145072 0.66 1
Target:  5'- gUGUaUAUAGCUUaGGUaUUAAAGGGu -3'
miRNA:   3'- aACAaGUAUCGAAcCCAcAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 131171 0.77 0.981009
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.