miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 31126 0.72 0.999663
Target:  5'- -aGUaUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aaCAaGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 146770 0.72 0.999663
Target:  5'- ----aCAUGGUUUaGGUGUUAGAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 3102 0.72 0.999737
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 114438 0.71 0.999796
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 156822 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 5415 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 117105 0.71 0.999796
Target:  5'- uUUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 39617 0.71 0.999796
Target:  5'- ---aUUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaAGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 67392 0.71 0.999844
Target:  5'- gUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 149241 0.71 0.999881
Target:  5'- cUGUgUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 23505 0.71 0.99991
Target:  5'- gUUGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 15506 0.7 0.999932
Target:  5'- gUGUauaUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 134368 0.7 0.999963
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAAGGg -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 165977 0.7 0.999963
Target:  5'- uUUGUaUAUGGCUUauGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 100130 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 130910 0.7 0.999973
Target:  5'- aUUGUUUAUAGCUUaGGauUUAAAGGGu -3'
miRNA:   3'- -AACAAGUAUCGAAcCCacAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 86050 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 116855 0.69 0.999981
Target:  5'- cUGUUCAuaUAGCUUaGaUGUUAAAGGGu -3'
miRNA:   3'- aACAAGU--AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 87105 0.69 0.999986
Target:  5'- ----aUAUAGCUUaGGG-GUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAA-CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 48613 0.69 0.999986
Target:  5'- ----aUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.