miRNA display CGI


Results 41 - 60 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 15506 0.7 0.999932
Target:  5'- gUGUauaUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aACAa--GUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 23505 0.71 0.99991
Target:  5'- gUUGUaUAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 149241 0.71 0.999881
Target:  5'- cUGUgUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 67392 0.71 0.999844
Target:  5'- gUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- aACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 117105 0.71 0.999796
Target:  5'- uUUGUaUAUAGCUUaaGUGUUAAAAGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 5415 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 114438 0.71 0.999796
Target:  5'- -aGUaUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 156822 0.71 0.999796
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 39617 0.71 0.999796
Target:  5'- ---aUUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaAGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 3102 0.72 0.999737
Target:  5'- cUUGUUCAuauaUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAAGU----AUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 146770 0.72 0.999663
Target:  5'- ----aCAUGGUUUaGGUGUUAGAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 31126 0.72 0.999663
Target:  5'- -aGUaUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aaCAaGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 122804 0.72 0.99946
Target:  5'- -aGUaUAUAGCUUaGGG-GUUAAAGGGu -3'
miRNA:   3'- aaCAaGUAUCGAA-CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169577 0.72 0.99946
Target:  5'- -aGUgUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aaCAaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 169152 0.72 0.999322
Target:  5'- cUUGUUCAUAGCUUaGaUGUUAAAAGu -3'
miRNA:   3'- -AACAAGUAUCGAAcCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 71493 0.73 0.998956
Target:  5'- uUUGUUUauAUAGCcuaGGUGUUAAAGGGg -3'
miRNA:   3'- -AACAAG--UAUCGaacCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 45356 0.73 0.998717
Target:  5'- --aUUUAUAGCUUGGaUGUUAAAAGa -3'
miRNA:   3'- aacAAGUAUCGAACCcACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 16921 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 88868 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 135833 0.74 0.997243
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.