miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28292 5' -43.3 NC_005902.1 + 105305 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 146942 0.68 0.999997
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 169168 0.68 0.999997
Target:  5'- ----aUAUAGCUUaGGUGUUAAAGGa -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 3476 0.69 0.999995
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAAAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 49144 0.69 0.999993
Target:  5'- cUUGUUUAUAuauaaCUUGGGUGUUAAAu-- -3'
miRNA:   3'- -AACAAGUAUc----GAACCCACAAUUUucc -5'
28292 5' -43.3 NC_005902.1 + 69408 0.69 0.999993
Target:  5'- cUUGUaUAUAGCUUaGGUGUUAAAAa- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 162430 0.69 0.999993
Target:  5'- uUUGUgugUAUAGCUUaGGUGUUAAAGa- -3'
miRNA:   3'- -AACAa--GUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 71686 0.69 0.999993
Target:  5'- uUUGUaUAUAGCUUaGGUGUUAGAAu- -3'
miRNA:   3'- -AACAaGUAUCGAAcCCACAAUUUUcc -5'
28292 5' -43.3 NC_005902.1 + 105874 0.69 0.999993
Target:  5'- aUGaUUUAUGGUg-GGGUGUUAAAAGu -3'
miRNA:   3'- aAC-AAGUAUCGaaCCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 48283 0.69 0.99999
Target:  5'- uUUGUUUauauAUAGCUUaaGUGUUAAAGGGu -3'
miRNA:   3'- -AACAAG----UAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 157890 0.69 0.99999
Target:  5'- ----aUAUAGCUUaGGUGUUAAAAGa -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCc -5'
28292 5' -43.3 NC_005902.1 + 78894 0.69 0.99999
Target:  5'- cUUGUUUauauAUAGCUUagaGGGUGgaUAAAAGGu -3'
miRNA:   3'- -AACAAG----UAUCGAA---CCCACa-AUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 87105 0.69 0.999986
Target:  5'- ----aUAUAGCUUaGGG-GUUAAAGGGu -3'
miRNA:   3'- aacaaGUAUCGAA-CCCaCAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 48613 0.69 0.999986
Target:  5'- ----aUAUAGUUUaGGUGUUAAAAGGu -3'
miRNA:   3'- aacaaGUAUCGAAcCCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 116855 0.69 0.999981
Target:  5'- cUGUUCAuaUAGCUUaGaUGUUAAAGGGu -3'
miRNA:   3'- aACAAGU--AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 130910 0.7 0.999973
Target:  5'- aUUGUUUAUAGCUUaGGauUUAAAGGGu -3'
miRNA:   3'- -AACAAGUAUCGAAcCCacAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 86050 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 100130 0.7 0.999973
Target:  5'- aUGUUCAuauaUAGCUUaGaUGUUAAAGGGg -3'
miRNA:   3'- aACAAGU----AUCGAAcCcACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 165977 0.7 0.999963
Target:  5'- uUUGUaUAUGGCUUauGUGUUAAAGGGu -3'
miRNA:   3'- -AACAaGUAUCGAAccCACAAUUUUCC- -5'
28292 5' -43.3 NC_005902.1 + 134368 0.7 0.999963
Target:  5'- -aGUaUAUAGCUUaaGUGUUAAAAGGg -3'
miRNA:   3'- aaCAaGUAUCGAAccCACAAUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.